Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0493
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   130   9e-31
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   127   5e-30
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical ...    29   1.8  
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    29   3.2  
AF098994-3|AAT81188.1|  455|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF098994-2|AAT81187.1|  505|Caenorhabditis elegans Hypothetical ...    27   7.4  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  130 bits (313), Expect = 9e-31
 Identities = 75/145 (51%), Positives = 88/145 (60%)
 Frame = +2

Query: 74  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*K 253
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRR  K
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 254 MLSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYG 433
           +         K ++ L    K +                   +  +        SIGIYG
Sbjct: 75  IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYG 134

Query: 434 LDFYVVLGRPGFNVAHRRRKTGKVG 508
           +DFYVVL R G  +A RRR  G+VG
Sbjct: 135 MDFYVVLDRAGRRIAKRRRAPGRVG 159



 Score =  124 bits (300), Expect = 3e-29
 Identities = 62/109 (56%), Positives = 77/109 (70%)
 Frame = +1

Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
           K AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYD      
Sbjct: 74  KIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIY 133

Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIIL 576
                     A  + + ++    + G  HR+ +E+++KWFQQKYDGIIL
Sbjct: 134 GMDFYVVLDRAGRRIAKRRRAPGRVGPSHRVEREESIKWFQQKYDGIIL 182


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  127 bits (307), Expect = 5e-30
 Identities = 73/144 (50%), Positives = 86/144 (59%)
 Frame = +2

Query: 77  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KM 256
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRR  K+
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 257 LSIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYGL 436
                    K ++ L    K +                   +  +         IGIYG+
Sbjct: 76  AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGM 135

Query: 437 DFYVVLGRPGFNVAHRRRKTGKVG 508
           DFYVVL R G  V+ RRR  G++G
Sbjct: 136 DFYVVLNRNGVRVSKRRRAPGRIG 159



 Score =  124 bits (298), Expect = 6e-29
 Identities = 63/109 (57%), Positives = 75/109 (68%)
 Frame = +1

Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
           K AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYD      
Sbjct: 74  KIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIY 133

Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIIL 576
                        + S ++    + G  HR+ KE+ +KWFQQKYDGIIL
Sbjct: 134 GMDFYVVLNRNGVRVSKRRRAPGRIGPSHRVDKEETIKWFQQKYDGIIL 182


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 307  GLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNLWT 435
            G  + E     DN S T N G  I+ H DL    +  +W LW+
Sbjct: 1489 GTPIAEITYHFDNCSVTDNSGPIIESHRDLYASANVFHWILWS 1531


>AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical
           protein C16C4.6 protein.
          Length = 366

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 576 KYDTIIFLLEPLHSIFLCEAV-GNPTFPVLRLLCATLK 466
           K DT +F     HS+F+   V  +P+FPVLRL    L+
Sbjct: 36  KIDTRLFQSVSRHSLFIIPPVMSSPSFPVLRLPSKALR 73


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 268 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQ 381
           ++R   AEE+  RG  +  Y E+RR     TG FG G +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFE 391


>AF098994-3|AAT81188.1|  455|Caenorhabditis elegans Hypothetical
           protein T06A4.3b protein.
          Length = 455

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 315 FQTPLKDFFCFSSSDCTMDSIFXXRRIPKDRTVYLALE 202
           + T L  F CFS+   +  S    R +PK +T + A++
Sbjct: 3   YNTSLLIFLCFSAVSLSTQSFAVYRLLPKSQTDFQAIQ 40


>AF098994-2|AAT81187.1|  505|Caenorhabditis elegans Hypothetical
           protein T06A4.3a protein.
          Length = 505

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 315 FQTPLKDFFCFSSSDCTMDSIFXXRRIPKDRTVYLALE 202
           + T L  F CFS+   +  S    R +PK +T + A++
Sbjct: 3   YNTSLLIFLCFSAVSLSTQSFAVYRLLPKSQTDFQAIQ 40


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,165,222
Number of Sequences: 27780
Number of extensions: 265230
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)