Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0493
(583 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 119 1e-27
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 119 1e-27
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 119 1e-27
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 118 2e-27
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 118 4e-27
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 32 0.24
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 29 2.3
At4g26330.1 68417.m03786 subtilase family protein contains simil... 28 5.2
At5g60200.1 68418.m07546 Dof-type zinc finger domain-containing ... 27 6.9
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 27 6.9
At2g48100.2 68415.m06021 exonuclease family protein contains Pfa... 27 6.9
At2g48100.1 68415.m06020 exonuclease family protein contains Pfa... 27 6.9
At1g16720.1 68414.m02005 expressed protein 27 9.1
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 119 bits (287), Expect = 1e-27
Identities = 70/143 (48%), Positives = 84/143 (58%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KML 259
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 260 SIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYGLD 439
V K + L K + + + S GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 440 FYVVLGRPGFNVAHRRRKTGKVG 508
FYVVL RPG+ VA RRR +VG
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVG 151
Score = 116 bits (279), Expect = 1e-26
Identities = 59/110 (53%), Positives = 73/110 (66%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIILN 579
++ + ++ + GI HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 119 bits (287), Expect = 1e-27
Identities = 70/143 (48%), Positives = 84/143 (58%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KML 259
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 260 SIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYGLD 439
V K + L K + + + S GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 440 FYVVLGRPGFNVAHRRRKTGKVG 508
FYVVL RPG+ VA RRR +VG
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVG 151
Score = 116 bits (279), Expect = 1e-26
Identities = 59/110 (53%), Positives = 73/110 (66%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIILN 579
++ + ++ + GI HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 119 bits (287), Expect = 1e-27
Identities = 70/143 (48%), Positives = 84/143 (58%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KML 259
N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 9 NPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 68
Query: 260 SIVQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYGLD 439
V K + L K + + + S GIYG+D
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMD 128
Query: 440 FYVVLGRPGFNVAHRRRKTGKVG 508
FYVVL RPG+ VA RRR +VG
Sbjct: 129 FYVVLERPGYRVARRRRCKTRVG 151
Score = 116 bits (279), Expect = 1e-26
Identities = 59/110 (53%), Positives = 73/110 (66%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD
Sbjct: 66 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 125
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIILN 579
++ + ++ + GI HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 126 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 175
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 118 bits (285), Expect = 2e-27
Identities = 69/141 (48%), Positives = 83/141 (58%)
Frame = +2
Query: 86 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KMLSI 265
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 266 VQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYGLDFY 445
V K + L K + + + S GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 446 VVLGRPGFNVAHRRRKTGKVG 508
VVL RPG+ VA RRR +VG
Sbjct: 121 VVLERPGYRVARRRRCKARVG 141
Score = 116 bits (279), Expect = 1e-26
Identities = 59/110 (53%), Positives = 73/110 (66%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIILN 579
++ + ++ + GI HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILN 165
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 118 bits (283), Expect = 4e-27
Identities = 69/141 (48%), Positives = 83/141 (58%)
Frame = +2
Query: 86 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRX*KMLSI 265
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRR K+
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 266 VQSEELKQKKSLRGV*KSENMNCGVTTSPPRVILASVFKNTLTWVSSTIXSIGIYGLDFY 445
V K + L K + + + S GIYG+DFY
Sbjct: 61 VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
Query: 446 VVLGRPGFNVAHRRRKTGKVG 508
VVL RPG+ VA RRR +VG
Sbjct: 121 VVLERPGYRVARRRRCKTRVG 141
Score = 116 bits (279), Expect = 1e-26
Identities = 59/110 (53%), Positives = 73/110 (66%)
Frame = +1
Query: 250 KDAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDXLNWNL 429
K A + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYD
Sbjct: 56 KIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIY 115
Query: 430 WTGLLRXTWPARFQRSTQKA*DRKSGIPHRLTKEDAMKWFQQKYDGIILN 579
++ + ++ + GI HR+TK+DAMKWFQ KY+G+ILN
Sbjct: 116 GMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILN 165
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +2
Query: 80 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 241
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIR 135
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +1
Query: 292 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYD 411
E+LE+GLK EY + S +G G GI+ H +D GIK D
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327
>At4g26330.1 68417.m03786 subtilase family protein contains
similarity to SBT1, a subtilase from tomato plants
GI:1771160 from [Lycopersicon esculentum]
Length = 746
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 368 PKLPVAEKLSRRNSYSLTFKPLSRISSALAPRTVQWT 258
P++ V K + +SY +TFKP S + WT
Sbjct: 687 PRILVFSKCQQEHSYYVTFKPTEIFSGRYVFGEIMWT 723
>At5g60200.1 68418.m07546 Dof-type zinc finger domain-containing
protein similar to dof6 zinc finger protein GI:5689615
from [Arabidopsis thaliana]
Length = 257
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 346 FSATGNFGFGIQEHIDLGIKYDXLN 420
FSA G G+ EHIDL + + LN
Sbjct: 132 FSAAGFNGYSNNEHIDLSLAFALLN 156
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 289 EEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLG 399
E+ +E L+ RE L+ D F+ G GF G + +DLG
Sbjct: 130 EQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLG 167
>At2g48100.2 68415.m06021 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 79 KCNAESSYQKALLEHMCW 132
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At2g48100.1 68415.m06020 exonuclease family protein contains Pfam
domain PF00929: exonuclease
Length = 344
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 79 KCNAESSYQKALLEHMCW 132
K NAE YQK+ E+ CW
Sbjct: 319 KMNAEELYQKSTSEYRCW 336
>At1g16720.1 68414.m02005 expressed protein
Length = 598
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = -3
Query: 434 VHKFQLRXSYLIPKSMCS*IPKPKLPVAEKLSRRNSYSLTFK 309
+H+F R +IP++ S P P P +K ++ ++T K
Sbjct: 32 IHRFHDRSQIVIPRAQSSSSPSPSPPSDKKKTKTRPGTITTK 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,443,961
Number of Sequences: 28952
Number of extensions: 248425
Number of successful extensions: 709
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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