Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0492
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             110   6e-25
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.15 
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.2  
SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)                   28   5.5  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  110 bits (265), Expect = 6e-25
 Identities = 50/60 (83%), Positives = 56/60 (93%)
 Frame = +2

Query: 251 SFSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 430
           + SK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR+RYQKSYR
Sbjct: 48  AISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQKSYR 107



 Score = 61.7 bits (143), Expect(2) = 2e-10
 Identities = 27/41 (65%), Positives = 34/41 (82%)
 Frame = +3

Query: 141 KLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYAIRQAFQR 263
           K++EPILLLGKE+F  V IRV VKGGGH +++YAIRQA  +
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIYAIRQAISK 51



 Score = 20.6 bits (41), Expect(2) = 2e-10
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 15 QAVQVFGRK 41
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 266 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 376
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 185 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 99
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_35353| Best HMM Match : Arm (HMM E-Value=6.6e-27)
          Length = 513

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 218 WSCSTSLRYQTSFSKA 265
           WSCSTS+R +TS  KA
Sbjct: 155 WSCSTSMRNRTSIFKA 170


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 77  SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 190
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,950,085
Number of Sequences: 59808
Number of extensions: 359285
Number of successful extensions: 1032
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)