Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0492
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...   128   3e-30
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.52 
AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4 ...    30   1.2  
AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin pro...    30   1.2  
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   3.7  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   3.7  
Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical pr...    28   4.8  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z36282-1|CAD45602.1|  424|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AF455271-1|AAL65193.1|  424|Caenorhabditis elegans C21ORF80 prot...    27   6.4  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score =  128 bits (308), Expect = 3e-30
 Identities = 54/84 (64%), Positives = 73/84 (86%)
 Frame = +3

Query: 12  IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 191
           +Q+VQ FGRKKTATAVA+CK+G G+++VNGRPL+ +EP++L+ KLQEP+LL+GKE+F  V
Sbjct: 5   VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64

Query: 192 XIRVTVKGGGHVAQVYAIRQAFQR 263
            IR+ V GGGHVAQ+YA+RQA  +
Sbjct: 65  DIRIRVSGGGHVAQIYAVRQALAK 88



 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 44/60 (73%), Positives = 52/60 (86%)
 Frame = +2

Query: 251 SFSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 430
           + +KAL+A+Y KYVDE SK+E+K+I   YD+SLLVADPRR E KKFGGPGARARYQKSYR
Sbjct: 85  ALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 287 YVDEASKKEIKDILVQYDRSLLVADPRRCE 376
           + DE  +KE+ D+  QYDRS+ + D  R E
Sbjct: 151 FCDEVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>AF410936-1|AAL05561.1|  348|Caenorhabditis elegans ephrin EFN-4
           protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -3

Query: 227 YMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 48
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 47  G 45
           G
Sbjct: 208 G 208


>AF038619-2|AAB92075.2|  348|Caenorhabditis elegans Eph(f)rin
           protein 4 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -3

Query: 227 YMTTTLDCHSDXNHREFFLAEQKDRFLKFVLQQSGLNQVQWAPVYTQHSMTTLAIRNCGG 48
           YMTT+    +  NHR + L E ++  L   +  S  +  + AP   Q    T A     G
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSASQPHPTRRAPTRRQEDFVTTASAELMG 207

Query: 47  G 45
           G
Sbjct: 208 G 208


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 221 TTTLDCHSDXNHREFFLAEQKD-RF--LKFVLQQSG 123
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 181


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 221 TTTLDCHSDXNHREFFLAEQKD-RF--LKFVLQQSG 123
           TT LDC  +  H EF+ AE  D RF  + F+ +Q G
Sbjct: 21  TTFLDCLMEQTHPEFYRAEDADARFTDILFIEKQRG 56


>Z81115-5|CAB03295.1|  482|Caenorhabditis elegans Hypothetical
           protein T05D4.5 protein.
          Length = 482

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
 Frame = +2

Query: 284 KYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSY-R*AFKKTIGWY 460
           K +DE   ++I + L++  R ++ A+  + EPK       R R +K + +   KK   W 
Sbjct: 283 KKIDEIKARKIDEKLIE--REIVRAESPKFEPKT-----RRLRVEKFFNQQKQKKENEWM 335

Query: 461 RRGVVLSLRY----HWVVYNKNIKSLKKK 535
            +  V + R     HW +  KNIK+ KKK
Sbjct: 336 EKLKVDASRKPMLSHWDLEMKNIKAEKKK 364


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 347 LLVADPRRCEPKKFGGPGARARY 415
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>Z78062-3|CAB01496.1| 1232|Caenorhabditis elegans Hypothetical protein
            F16D3.4 protein.
          Length = 1232

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 84   MLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGG 221
            ++ +   P+D +  R + ++L+ P+L LG E +  + + + V  GG
Sbjct: 1004 LMNIYSEPMDFISDRTV-FQLK-PLLDLGSEYYEQLILGIVVSAGG 1047


>Z36282-1|CAD45602.1|  424|Caenorhabditis elegans Hypothetical
           protein K10G9.3 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 215 WWSCSTSLRYQTSFSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--F 388
           +W    S+RY         AF +KY+D   K+         D++ LV D  + +P++   
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKR---------DKTKLVDDWTKEKPRRTAI 280

Query: 389 GGP 397
           GGP
Sbjct: 281 GGP 283


>AF455271-1|AAL65193.1|  424|Caenorhabditis elegans C21ORF80
           protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +2

Query: 215 WWSCSTSLRYQTSFSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKK--F 388
           +W    S+RY         AF +KY+D   K+         D++ LV D  + +P++   
Sbjct: 230 YWKARRSMRYSNDLVDVADAFRKKYLDSDDKR---------DKTKLVDDWTKEKPRRTAI 280

Query: 389 GGP 397
           GGP
Sbjct: 281 GGP 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,119,698
Number of Sequences: 27780
Number of extensions: 259731
Number of successful extensions: 640
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)