Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0492
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C) 113 7e-26
At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same... 113 7e-26
At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) simi... 112 2e-25
At3g49080.1 68416.m05362 ribosomal protein S9 family protein con... 37 0.007
At1g43570.1 68414.m05001 hypothetical protein 31 0.37
At2g11810.1 68415.m01269 1,2-diacylglycerol 3-beta-galactosyltra... 30 0.84
At5g20410.1 68418.m02427 1,2-diacylglycerol 3-beta-galactosyltra... 30 1.1
At5g44580.1 68418.m05463 expressed protein 29 2.6
At3g24255.1 68416.m03045 expressed protein 27 7.9
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 27 7.9
>At5g18380.1 68418.m02162 40S ribosomal protein S16 (RPS16C)
Length = 146
Score = 113 bits (272), Expect = 7e-26
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +2
Query: 251 SFSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 430
S +KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 109 bits (262), Expect = 1e-24
Identities = 45/83 (54%), Positives = 67/83 (80%)
Frame = +3
Query: 15 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVX 194
++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EP+LLLGK +F+ V
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67
Query: 195 IRVTVKGGGHVAQVYAIRQAFQR 263
+R+ V GGGH +QVYAIRQ+ +
Sbjct: 68 MRIRVNGGGHTSQVYAIRQSIAK 90
>At2g09990.1 68415.m01037 40S ribosomal protein S16 (RPS16A) Same as
GB:Q42340
Length = 146
Score = 113 bits (272), Expect = 7e-26
Identities = 51/60 (85%), Positives = 57/60 (95%)
Frame = +2
Query: 251 SFSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 430
S +KAL+A+YQKYVDE SKKEIKDILV+YDR+LLVADPRRCEPKKFGG GAR+RYQKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Score = 109 bits (263), Expect = 9e-25
Identities = 46/83 (55%), Positives = 67/83 (80%)
Frame = +3
Query: 15 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVX 194
++VQ FGRKKTA AV +CKRG G++++NG P++L +P +L++K+ EPILLLGK +F+ V
Sbjct: 8 ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67
Query: 195 IRVTVKGGGHVAQVYAIRQAFQR 263
+R+ V GGGH +QVYAIRQ+ +
Sbjct: 68 MRIRVNGGGHTSQVYAIRQSIAK 90
>At3g04230.1 68416.m00447 40S ribosomal protein S16 (RPS16B) similar
to 40S ribosomal protein S16 GB:AAD22696 [Arabidopsis
thaliana]
Length = 146
Score = 112 bits (269), Expect = 2e-25
Identities = 50/60 (83%), Positives = 57/60 (95%)
Frame = +2
Query: 251 SFSKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 430
S +KAL+A+YQKYVDE SKKEIKDIL++YDR+LLVADPRRCE KKFGGPGARAR+QKSYR
Sbjct: 87 SIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
Score = 109 bits (261), Expect = 2e-24
Identities = 45/83 (54%), Positives = 67/83 (80%)
Frame = +3
Query: 15 QAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVX 194
++VQ FGRKKTATAV YCKRG GM+++NG P++L +P +L++K+ EP+LLLGK +F+ V
Sbjct: 8 ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67
Query: 195 IRVTVKGGGHVAQVYAIRQAFQR 263
+R+ GGG+ ++VYAIRQ+ +
Sbjct: 68 MRIRATGGGNTSRVYAIRQSIAK 90
>At3g49080.1 68416.m05362 ribosomal protein S9 family protein
contains Pfam profile PF00380: ribosomal protein S9
Length = 430
Score = 37.1 bits (82), Expect = 0.007
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = +3
Query: 33 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 212
GR+K + A + + G G +VN + D+ P +L ++ L + I+ TVK
Sbjct: 310 GRRKCSIARVWIQPGEGKFQVNEKEFDVYFP-MLDHRAALLRPLAETKTLGRWDIKCTVK 368
Query: 213 GGGHVAQVYAIRQAFQR 263
GGG QV AI+ R
Sbjct: 369 GGGTTGQVGAIQLGISR 385
>At1g43570.1 68414.m05001 hypothetical protein
Length = 348
Score = 31.5 bits (68), Expect = 0.37
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 372 QRRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 265
+R S T + LSYC R+ LI S T FW A R
Sbjct: 19 KRISSWTGRFLSYCGRLQLIKSVLMSITNFWSSAFR 54
>At2g11810.1 68415.m01269 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase type C
[gi:9927295] from Arabidopsis thaliana, similar to MGDG
synthase type A [gi:9884651] from Glycine max
Length = 465
Score = 30.3 bits (65), Expect = 0.84
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 165 LGKEKFSMVXIRVTVKGGGHVAQVYAIRQAFQ 260
+G E+ V I ++ GGGH A AIR AF+
Sbjct: 67 MGAERIKTVLILMSDTGGGHRASAEAIRDAFK 98
>At5g20410.1 68418.m02427 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative identical to
monogalactosyldiacylglycerol synthase [gi:3367638] from
Arabidopsis thaliana, similar to MGDG synthase type A
[gi:9884651] from Glycine max
Length = 468
Score = 29.9 bits (64), Expect = 1.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 156 ILLLGKEKFSMVXIRVTVKGGGHVAQVYAIRQAFQ 260
++ +G E+ V I ++ GGGH A AIR AF+
Sbjct: 60 LIQIGAERTKNVLILMSDTGGGHRASAEAIRDAFK 94
>At5g44580.1 68418.m05463 expressed protein
Length = 98
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = -2
Query: 534 FFFKLFIFLLYTTQ*YRNDNTTPRRYHPMVFLKA*R*DFWYLARAPGPPNFLGSQRRGSA 355
F L +FLL T R ++ P YH +FL R +++ A G P+ GS
Sbjct: 10 FIHLLIVFLLLCTFLSRTESALP--YHHELFLGRKRMNYYKPNSAIGTPSSTSDHAPGSN 67
Query: 354 TSKLLS 337
KL+S
Sbjct: 68 GRKLMS 73
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 369 RRGSATSKLLSYCTRMSLISFFEASSTYFW*KAIR 265
R G T++ LS+ R+ LIS S T FW A R
Sbjct: 142 RIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFR 176
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 221 SCSTSLRYQTSFSKALIAFYQKYVDEASKKEIKDILVQYDRSLL 352
SC R+Q AL F+Q++ AS IL Y+R LL
Sbjct: 1563 SCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSAYNRGLL 1606
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,458,868
Number of Sequences: 28952
Number of extensions: 248536
Number of successful extensions: 727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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