Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0491
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    38   0.001
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    35   0.009
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   4.0  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   4.0  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   4.0  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    26   5.3  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.0  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    25   7.0  

>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +2

Query: 11  DETLMCSFQILKPADK--RKCHSGLNMGRXNTPPR 109
           DE+L+CSFQILKPA+K  R  + G +     TPPR
Sbjct: 285 DESLLCSFQILKPAEKKQRYGYQGSSQNWHMTPPR 319


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +2

Query: 11  DETLMCSFQILKPADKRKCHSGLNMGRXNTPPRAQPKXKKN 133
           +E L+CSFQILKPA+KR+  S  ++    +   +  K K N
Sbjct: 282 NEDLLCSFQILKPAEKRQRVSQSSIKESKSATNSLKKSKNN 322


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 327 VSRTFRPTARLYGRLLGCQTLTLMLQLRKQRFTK 226
           V   + P   +YG  L C   +L++QLRK+ + +
Sbjct: 230 VRLVYLPMGYMYGERLKCPKDSLIMQLRKELYVE 263


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 387 YWISFRRNLCPSFFFRVYGLVSRTFRPTARLYGRLLGCQTLTLMLQLR 244
           Y    R+NL      +  G + R+ R  A+    +  C T+  +LQLR
Sbjct: 848 YASGIRQNLLSDQELQYSGFIDRSLRYDAKTSVDISSCHTMLQLLQLR 895


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 506 LAPLELSASEKVSGQRAPNAVRLREKKKTIQYYVSQKLAVKL 631
           LAPL     E   GQ+  N +  + + KTI+ +   KL + L
Sbjct: 527 LAPLGYDIREHPGGQQFWNTLTAKSEAKTIRSFTKLKLFILL 568


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -3

Query: 517 KWGKRIF-NTHFLDSESERPDSLSETLNAFLTENCNYHYSNVSLLLDIV*TQSLPVFFFS 341
           K  KR++ NT+ ++    R   +   L+A +   C YH +N  +      T  L  F F 
Sbjct: 36  KLTKRVYSNTNEVNGLQGRTFGIWTLLSAIVRFYCAYHITNPDVYFLCQCTYYLACFHFL 95

Query: 340 SLW 332
           S W
Sbjct: 96  SEW 98


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 475 ESERPDSLSETLNAFLTENCNYHYSNVSLLLDI 377
           + E P SLS+T ++       YH  N S+  DI
Sbjct: 609 DDEAPVSLSKTSSSTRLNGLGYHSRNTSIASDI 641


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 478 SESERPDSLSETLNAFLTENCNYHYSNVSLLLDIV*TQSLPVFFFSS 338
           SES  P+S SET+   + +N N      S L+D     S+P  FF S
Sbjct: 134 SESSYPNSNSETITYDIDDNVN----PSSSLVDNFSISSVPSVFFQS 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,779
Number of Sequences: 5004
Number of extensions: 48612
Number of successful extensions: 129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)