Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0491
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143           42   4e-04
01_03_0220 - 13905808-13905831,13906694-13906885,13906960-139075...    34   0.11 
02_05_1246 - 35226759-35226860,35227521-35227715,35227804-352283...    33   0.14 
07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993     31   1.0  
07_01_0037 + 301864-302349                                             27   9.5  

>06_01_0457 - 3263519-3263749,3264565-3265175,3265966-3266143
          Length = 339

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
 Frame = +2

Query: 11  DETLMCSFQILKPADKR-KCHSGLNMGRXNTPPR 109
           D++L CSFQILKP+DK+ K  +G NM +  TPPR
Sbjct: 300 DDSLTCSFQILKPSDKKGKAGTG-NMSKPGTPPR 332


>01_03_0220 -
           13905808-13905831,13906694-13906885,13906960-13907519,
           13910007-13910187
          Length = 318

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +2

Query: 11  DETLMCSFQILKPADKRKCHS 73
           DE+LMCSFQILKP D    HS
Sbjct: 284 DESLMCSFQILKPNDTGAPHS 304


>02_05_1246 -
           35226759-35226860,35227521-35227715,35227804-35228363,
           35229299-35229476
          Length = 344

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 11  DETLMCSFQILKPADK 58
           D+TLMCSFQILKPA K
Sbjct: 283 DDTLMCSFQILKPARK 298


>07_03_0335 - 16903775-16904118,16904203-16904325,16904424-16905993
          Length = 678

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 478 SESERPDSLSETLNAFLTENCNYHYSNVSLLLD 380
           S SE+P S+  T++A L +  N H S+V + +D
Sbjct: 545 SRSEKPASIGSTIDAVLLQEGNTHTSDVEMSMD 577


>07_01_0037 + 301864-302349
          Length = 161

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 185 GRGVHACVGGRRACGAINSSXSWAVRAAA 99
           G GV A V G   CG ++    W   AAA
Sbjct: 91  GGGVVAAVDGMEGCGTVSGRMGWHSSAAA 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,928,887
Number of Sequences: 37544
Number of extensions: 347455
Number of successful extensions: 858
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)