Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0491
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-9|AAK18957.1|  333|Caenorhabditis elegans Yeast glc seven...    48   6e-06
Z73974-3|CAA98273.1|  329|Caenorhabditis elegans Hypothetical pr...    40   0.002
Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    29   3.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   3.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   3.7  
AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family ...    29   3.7  
AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family ...    29   3.7  
AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family ...    29   3.7  
AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family ...    29   3.7  
AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family ...    29   3.7  
Z83117-3|CAB05570.2|  356|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AY008137-1|AAG32090.1|  356|Caenorhabditis elegans heterotrimeri...    28   4.9  
Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U00063-9|AAK18957.1|  333|Caenorhabditis elegans Yeast glc
           seven-like phosphatasesprotein 2 protein.
          Length = 333

 Score = 48.0 bits (109), Expect = 6e-06
 Identities = 25/41 (60%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +2

Query: 5   TRDETLMCSFQILKPADKRKC---HSGLNMGRXNTPPRAQP 118
           T DETLMCSFQILKPADK+K      G+   R  TPPR  P
Sbjct: 283 TVDETLMCSFQILKPADKKKYPYGAGGVGSNRPVTPPRNAP 323


>Z73974-3|CAA98273.1|  329|Caenorhabditis elegans Hypothetical
           protein F29F11.6 protein.
          Length = 329

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 2/29 (6%)
 Frame = +2

Query: 11  DETLMCSFQILKPADKRK--CHSGLNMGR 91
           DETLMCSFQILKP++K+    + G+N GR
Sbjct: 286 DETLMCSFQILKPSEKKAKYQYQGMNSGR 314


>Z73977-2|CAA98291.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 11  DETLMCSFQILKP 49
           DE L+CSFQILKP
Sbjct: 291 DENLLCSFQILKP 303


>Z73968-1|CAA98230.2|  349|Caenorhabditis elegans Hypothetical
           protein C05A2.1 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +2

Query: 11  DETLMCSFQILKP 49
           DE L+CSFQILKP
Sbjct: 291 DENLLCSFQILKP 303


>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
            protein.
          Length = 10578

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 479  VEKMSVKNSLAPLELSAS---EKVSGQRAPNAVRLREKKKTIQ 598
            VE+M  +  L P++ S S   EK S QR P+ +   +K KTIQ
Sbjct: 1329 VEQM--QKQLPPVQKSMSVQEEKASSQRTPSPMNYEDKVKTIQ 1369


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
            protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 479  VEKMSVKNSLAPLELSAS---EKVSGQRAPNAVRLREKKKTIQ 598
            VE+M  +  L P++ S S   EK S QR P+ +   +K KTIQ
Sbjct: 1329 VEQM--QKQLPPVQKSMSVQEEKASSQRTPSPMNYEDKVKTIQ 1369


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
            protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 479  VEKMSVKNSLAPLELSAS---EKVSGQRAPNAVRLREKKKTIQ 598
            VE+M  +  L P++ S S   EK S QR P+ +   +K KTIQ
Sbjct: 1329 VEQM--QKQLPPVQKSMSVQEEKASSQRTPSPMNYEDKVKTIQ 1369


>AC006695-5|ABS83861.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform g protein.
          Length = 1769

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 479  VEKMSVKNSLAPLELSAS---EKVSGQRAPNAVRLREKKKTIQ 598
            VE+M  +  L P++ S S   EK S QR P+ +   +K KTIQ
Sbjct: 1329 VEQM--QKQLPPVQKSMSVQEEKASSQRTPSPMNYEDKVKTIQ 1369


>AC006695-4|ABS83860.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform f protein.
          Length = 1769

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 479  VEKMSVKNSLAPLELSAS---EKVSGQRAPNAVRLREKKKTIQ 598
            VE+M  +  L P++ S S   EK S QR P+ +   +K KTIQ
Sbjct: 1329 VEQM--QKQLPPVQKSMSVQEEKASSQRTPSPMNYEDKVKTIQ 1369


>AC006695-3|ABS83859.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform e protein.
          Length = 1769

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 479  VEKMSVKNSLAPLELSAS---EKVSGQRAPNAVRLREKKKTIQ 598
            VE+M  +  L P++ S S   EK S QR P+ +   +K KTIQ
Sbjct: 1329 VEQM--QKQLPPVQKSMSVQEEKASSQRTPSPMNYEDKVKTIQ 1369


>AC006695-2|ABS83858.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform d protein.
          Length = 1769

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 479  VEKMSVKNSLAPLELSAS---EKVSGQRAPNAVRLREKKKTIQ 598
            VE+M  +  L P++ S S   EK S QR P+ +   +K KTIQ
Sbjct: 1329 VEQM--QKQLPPVQKSMSVQEEKASSQRTPSPMNYEDKVKTIQ 1369


>AC006695-1|ABS83857.1| 1769|Caenorhabditis elegans Titin family
            protein 1, isoform c protein.
          Length = 1769

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 479  VEKMSVKNSLAPLELSAS---EKVSGQRAPNAVRLREKKKTIQ 598
            VE+M  +  L P++ S S   EK S QR P+ +   +K KTIQ
Sbjct: 1329 VEQM--QKQLPPVQKSMSVQEEKASSQRTPSPMNYEDKVKTIQ 1369


>Z83117-3|CAB05570.2|  356|Caenorhabditis elegans Hypothetical
           protein M04C7.1 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 588 FFFSLSLTALGAR*PETFSLADSSSGASEFLTLIFS 481
           F++ LS   L A      SLADSS  A  F+ L F+
Sbjct: 92  FYYELSTPELDADAQHILSLADSSKDAMPFIPLTFN 127


>AY008137-1|AAG32090.1|  356|Caenorhabditis elegans heterotrimeric G
           protein alphasubunit protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 588 FFFSLSLTALGAR*PETFSLADSSSGASEFLTLIFS 481
           F++ LS   L A      SLADSS  A  F+ L F+
Sbjct: 92  FYYELSTPELDADAQHILSLADSSKDAMPFIPLTFN 127


>Z70311-1|CAA94376.2|  420|Caenorhabditis elegans Hypothetical
           protein T25B9.1 protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 466 RPDSLSETLNAFLTENCNYHYSNVSLLLDIV*TQSLPVFFFSSLWPGI 323
           RPD ++ TL   L  +   + +    L+D++  +S P  F +SL P I
Sbjct: 255 RPDVINSTLGKALGGSMGGYTTGPKPLIDLLRQRSRPYLFSNSLAPSI 302


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical
           protein F54G8.3 protein.
          Length = 1139

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 295 KTGSWPKGPRYQAINSKKKRR--AEIASKRYPVTERHLNNGSC 417
           +T ++P+G  Y+  ++ + +   A  A K  P T+RH   G C
Sbjct: 150 QTAAYPQGACYELESNLRLQSTYATCAQKNLPTTDRHNEYGGC 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,100,835
Number of Sequences: 27780
Number of extensions: 287173
Number of successful extensions: 767
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)