Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0491
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP... 38 0.006
At5g59160.2 68418.m07415 serine/threonine protein phosphatase PP... 36 0.023
At5g59160.1 68418.m07414 serine/threonine protein phosphatase PP... 36 0.023
At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP... 36 0.030
At2g39840.1 68415.m04893 serine/threonine protein phosphatase PP... 35 0.040
At2g29400.1 68415.m03573 serine/threonine protein phosphatase PP... 34 0.069
At4g11240.1 68417.m01820 serine/threonine protein phosphatase PP... 32 0.37
At5g27840.2 68418.m03338 serine/threonine protein phosphatase PP... 30 1.5
At5g27840.1 68418.m03337 serine/threonine protein phosphatase PP... 30 1.5
At1g67630.1 68414.m07712 DNA polymerase alpha subunit B family c... 29 3.4
At5g49670.1 68418.m06150 hypothetical protein 28 6.0
At3g05580.1 68416.m00619 serine/threonine protein phosphatase, p... 28 6.0
At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein / ... 27 7.9
>At1g64040.1 68414.m07254 serine/threonine protein phosphatase PP1
isozyme 3 (TOPP3) / phosphoprotein phosphatase 1
identical to SP|P48483 Serine/threonine protein
phosphatase PP1 isozyme 3 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GB:AAA32838
GI:166799 from [Arabidopsis thaliana]
Length = 322
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 11 DETLMCSFQILKPADKR-KCHSGLNMGRXNTPPR 109
D++L CSFQILK ++K+ G N GR TPPR
Sbjct: 283 DDSLTCSFQILKASEKKGNFGFGKNAGRRGTPPR 316
>At5g59160.2 68418.m07415 serine/threonine protein phosphatase PP1
isozyme 2 (TOPP2) identical to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 312
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +2
Query: 11 DETLMCSFQILKPADKR 61
DE+LMCSFQILKPAD++
Sbjct: 292 DESLMCSFQILKPADRK 308
>At5g59160.1 68418.m07414 serine/threonine protein phosphatase PP1
isozyme 2 (TOPP2) identical to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 312
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +2
Query: 11 DETLMCSFQILKPADKR 61
DE+LMCSFQILKPAD++
Sbjct: 292 DESLMCSFQILKPADRK 308
>At3g46820.1 68416.m05082 serine/threonine protein phosphatase PP1
isozyme 5 (TOPP5) / phosphoprotein phosphatase 1
identical to SP|P48485 Serine/threonine protein
phosphatase PP1 isozyme 5 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166803
{Arabidopsis thaliana}
Length = 312
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 11 DETLMCSFQILKPADKR 61
DE+LMCSFQILKP D+R
Sbjct: 292 DESLMCSFQILKPVDRR 308
>At2g39840.1 68415.m04893 serine/threonine protein phosphatase PP1
isozyme 4 (TOPP4) / phosphoprotein phosphatase 1
identical to SP|P48484 Serine/threonine protein
phosphatase PP1 isozyme 4 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166801
(Arabidopsis thaliana); contains a Ser/Thr protein
phosphatase signature (PDOC00115); contains a
metallo-phosphoesterase motif (QDOC50185)
Length = 321
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 11 DETLMCSFQILKPADKR 61
DE LMCSFQILKPA+K+
Sbjct: 296 DENLMCSFQILKPAEKK 312
>At2g29400.1 68415.m03573 serine/threonine protein phosphatase PP1
isozyme 1 (TOPP1) / phosphoprotein phosphatase 1
identical to SP|P30366| Serine/threonine protein
phosphatase PP1 isozyme 1 (EC 3.1.3.16) {Arabidopsis
thaliana}, phosphoprotein phosphatase 1 GI:166572
[Arabidopsis thaliana]
Length = 318
Score = 34.3 bits (75), Expect = 0.069
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +2
Query: 11 DETLMCSFQILKPADKR 61
DE+LMCSFQILKP++K+
Sbjct: 298 DESLMCSFQILKPSEKK 314
>At4g11240.1 68417.m01820 serine/threonine protein phosphatase PP1
isozyme 6 (PP1BG) (TOPP6) identical to SP|P48486
Serine/threonine protein phosphatase PP1 isozyme 6 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 322
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 11 DETLMCSFQILKPADKR-KCHSGLNMGRXNTPPRAQPKXK 127
D++L CSFQILK ++K+ + N+ R TPP K +
Sbjct: 283 DDSLTCSFQILKASEKKGRFGFNNNVPRPGTPPHKGGKGR 322
>At5g27840.2 68418.m03338 serine/threonine protein phosphatase PP1
isozyme 8 (TOPP8) identical to SP|O82734
Serine/threonine protein phosphatase PP1 isozyme 8 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 324
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 11 DETLMCSFQILKPADKRKCH 70
DE+L+CSF+I+KPA H
Sbjct: 288 DESLVCSFEIMKPAPASSSH 307
>At5g27840.1 68418.m03337 serine/threonine protein phosphatase PP1
isozyme 8 (TOPP8) identical to SP|O82734
Serine/threonine protein phosphatase PP1 isozyme 8 (EC
3.1.3.16) {Arabidopsis thaliana}
Length = 318
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 11 DETLMCSFQILKPADKRKCH 70
DE+L+CSF+I+KPA H
Sbjct: 288 DESLVCSFEIMKPAPASSSH 307
>At1g67630.1 68414.m07712 DNA polymerase alpha subunit B family
contains Pfam profile: PF04058 DNA polymerase alpha
subunit B
Length = 620
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 16 DADVLVPDPEAGRQAQVSLGPQHGPXXXXXXXXXXXXEELMAPHARRPP 162
D +VLVP E+ ++++VS GP EL+A R+PP
Sbjct: 343 DQEVLVPAEESCQKSEVSFIIASGPFTTSDNLLFEPLNELLAYAKRKPP 391
>At5g49670.1 68418.m06150 hypothetical protein
Length = 1184
Score = 27.9 bits (59), Expect = 6.0
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = -1
Query: 309 PTARLYGRLLGCQTLTLMLQLRKQRFTKTSTRSRYFKCTAVREGC 175
P +RLYG L T TL +Q+R F ST + KC EGC
Sbjct: 1133 PFSRLYGSNLRLNTGTLAVQIRNYTFPLLST--AFGKC----EGC 1171
>At3g05580.1 68416.m00619 serine/threonine protein phosphatase,
putative similar to serine/threonine protein phosphatase
PP1 isozyme 8 SP:O82734 from [Arabidopsis thaliana]
Length = 318
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = +2
Query: 11 DETLMCSFQILKPA 52
D++L+CSF+ILKPA
Sbjct: 288 DQSLVCSFEILKPA 301
>At2g35860.1 68415.m04403 beta-Ig-H3 domain-containing protein /
fasciclin domain-containing protein contains Pfam
profile PF02469: Fasciclin domain
Length = 445
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 525 DSSSGASEFLTLIFSTANLRDRIRSPKP 442
DSS GA++FL L+F T ++ + KP
Sbjct: 2 DSSYGATKFLLLLFLTTSIATALPDNKP 29
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,341,567
Number of Sequences: 28952
Number of extensions: 266735
Number of successful extensions: 658
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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