Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0490
(556 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc... 101 5e-23
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa... 101 5e-23
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz... 30 0.20
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 27 2.5
SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr... 26 3.2
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.5
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 9.9
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 9.9
>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 101 bits (243), Expect = 5e-23
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = +1
Query: 256 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARXRYQK 435
IRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR EPKKFGG GAR R QK
Sbjct: 78 IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137
Query: 436 SYR 444
SYR
Sbjct: 138 SYR 140
Score = 99 bits (238), Expect = 2e-22
Identities = 44/76 (57%), Positives = 60/76 (78%)
Frame = +2
Query: 26 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 205
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 206 XIRVTVKGGGHVAQVY 253
IRV V GGGHV+Q+Y
Sbjct: 61 DIRVRVSGGGHVSQIY 76
>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
S16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 140
Score = 101 bits (243), Expect = 5e-23
Identities = 47/63 (74%), Positives = 54/63 (85%)
Frame = +1
Query: 256 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARXRYQK 435
IRQAISKA++A+YQK+VDE SK E+K L+ YDR+LLVADPRR EPKKFGG GAR R QK
Sbjct: 78 IRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQK 137
Query: 436 SYR 444
SYR
Sbjct: 138 SYR 140
Score = 99 bits (238), Expect = 2e-22
Identities = 44/76 (57%), Positives = 60/76 (78%)
Frame = +2
Query: 26 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 205
+Q+VQ FG+K ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1 MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60
Query: 206 XIRVTVKGGGHVAQVY 253
IRV V GGGHV+Q+Y
Sbjct: 61 DIRVRVSGGGHVSQIY 76
>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 132
Score = 30.3 bits (65), Expect = 0.20
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +2
Query: 47 GRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVK 226
G++K++ A G G VNG P D+ R++ K L + + + TV
Sbjct: 12 GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70
Query: 227 GGGHVAQ 247
GGG Q
Sbjct: 71 GGGPTGQ 77
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 26.6 bits (56), Expect = 2.5
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 210 SEXQSRVVVM*H-KFTYQTSYFKGSDRLLPEICR 308
S+ + V++ H KF +Y KG+ ++P IC+
Sbjct: 759 SQLRRMAVIVKHGKFKKMDAYVKGAPEIMPSICK 792
>SPAC23C4.05c |||LEA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 3.2
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +3
Query: 129 WLSPDCCSTNFRNLSFCSARKNSLWLXSEXQSRVVVM*HKFTYQTSYFKGSDRLLPEI 302
W S D S N S S K S W E + + S K +RLLP +
Sbjct: 342 WSSSDMASLNDSLYSHPSVSKQSTWTEEELKEELESFGELVPVPFSSTKAFERLLPHL 399
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 113 RLHAAFHDHACNTQLRWRFS 54
RLH+ F++H C + L+ FS
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFS 1081
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 255 YQTSYFKGSDRLLPEICRRSLKEGNQRHPS 344
Y YF G D PE C QRH S
Sbjct: 42 YHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 425 DTRNLTVKPSRKPSGGIVAASCCH 496
D N+ VKP+ P+ + CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,541
Number of Sequences: 5004
Number of extensions: 39097
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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