Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0490
         (556 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)             118   3e-27
SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)                        33   0.16 
SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)            29   3.4  
SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_47363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score =  118 bits (284), Expect = 3e-27
 Identities = 55/63 (87%), Positives = 59/63 (93%)
 Frame = +1

Query: 256 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARXRYQK 435
           IRQAISK+L+A+YQKYVDE SKKEI+DILVQYDRSLLVADPRR E KKFGGPGAR RYQK
Sbjct: 45  IRQAISKSLVAYYQKYVDEVSKKEIRDILVQYDRSLLVADPRRTEAKKFGGPGARSRYQK 104

Query: 436 SYR 444
           SYR
Sbjct: 105 SYR 107



 Score = 52.0 bits (119), Expect(2) = 2e-07
 Identities = 22/33 (66%), Positives = 28/33 (84%)
 Frame = +2

Query: 155 KLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVY 253
           K++EPILLLGKE+F  V IRV VKGGGH +++Y
Sbjct: 11  KVEEPILLLGKERFEGVDIRVRVKGGGHTSRIY 43



 Score = 20.6 bits (41), Expect(2) = 2e-07
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 29 QAVQVFGRK 55
          Q+VQVFGRK
Sbjct: 3  QSVQVFGRK 11


>SB_228| Best HMM Match : SAM_1 (HMM E-Value=10)
          Length = 119

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 280 LIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 390
           ++AF QKY+D   +KE     +Q+ + +LV+  R CE
Sbjct: 53  VLAFRQKYLDNFGRKETSKRFLQFAQGVLVSLARECE 89


>SB_54739| Best HMM Match : Plasmid_killer (HMM E-Value=9.1)
          Length = 263

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +2

Query: 83  KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVXIRVTVKGGGHVAQVYVSD 262
           ++G+G++RV GR    +    + Y+L+ PI+L  K   + + I    +  GH+ Q  V  
Sbjct: 86  QKGNGLIRVGGR----IGKAQVDYELRHPIILPYKNHVTDLIIMDHHQSVGHMGQESVLS 141

Query: 263 KL 268
            L
Sbjct: 142 SL 143


>SB_3614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 199 REFFLAEQKDRFLKFVLQQSGLNQ--VQWAP 113
           R F   + KDR+LK  L++ G  Q   QW P
Sbjct: 12  RSFLFTQDKDRYLKAGLKKYGYGQWTAQWVP 42


>SB_45788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 91  SWNAACKRAPIGLG*AQTAAVQTSGTYPFARQGKILYG 204
           SW  A K+ P G G  ++     +G Y   R G+  YG
Sbjct: 19  SWQNAEKKKPAGFGRGRSKRGYVNGNYEARRPGERSYG 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,738,121
Number of Sequences: 59808
Number of extensions: 326254
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)