Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0490
(556 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 133 5e-31
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 133 5e-31
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 133 5e-31
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 133 5e-31
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 133 5e-31
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 79 1e-14
BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology dom... 34 0.29
AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein. 34 0.29
AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens ... 34 0.29
AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein. 34 0.29
BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for IM... 30 6.3
AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein. 30 6.3
AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein. 30 6.3
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 133 bits (321), Expect = 5e-31
Identities = 58/77 (75%), Positives = 72/77 (93%)
Frame = +2
Query: 23 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 202
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 203 VXIRVTVKGGGHVAQVY 253
V IRV VKGGGHVAQ+Y
Sbjct: 66 VDIRVRVKGGGHVAQIY 82
Score = 123 bits (297), Expect = 4e-28
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +1
Query: 256 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARXRYQK 435
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGAR RYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 436 SYR 444
SYR
Sbjct: 144 SYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 133 bits (321), Expect = 5e-31
Identities = 58/77 (75%), Positives = 72/77 (93%)
Frame = +2
Query: 23 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 202
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 203 VXIRVTVKGGGHVAQVY 253
V IRV VKGGGHVAQ+Y
Sbjct: 66 VDIRVRVKGGGHVAQIY 82
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 133 bits (321), Expect = 5e-31
Identities = 58/77 (75%), Positives = 72/77 (93%)
Frame = +2
Query: 23 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 202
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 203 VXIRVTVKGGGHVAQVY 253
V IRV VKGGGHVAQ+Y
Sbjct: 66 VDIRVRVKGGGHVAQIY 82
Score = 123 bits (297), Expect = 4e-28
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +1
Query: 256 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARXRYQK 435
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGAR RYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 436 SYR 444
SYR
Sbjct: 144 SYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 133 bits (321), Expect = 5e-31
Identities = 58/77 (75%), Positives = 72/77 (93%)
Frame = +2
Query: 23 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 202
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 203 VXIRVTVKGGGHVAQVY 253
V IRV VKGGGHVAQ+Y
Sbjct: 66 VDIRVRVKGGGHVAQIY 82
Score = 123 bits (297), Expect = 4e-28
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +1
Query: 256 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARXRYQK 435
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGAR RYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 436 SYR 444
SYR
Sbjct: 144 SYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 133 bits (321), Expect = 5e-31
Identities = 58/77 (75%), Positives = 72/77 (93%)
Frame = +2
Query: 23 PIQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSM 202
P+Q+VQVFGRKKTATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+F+
Sbjct: 6 PLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAG 65
Query: 203 VXIRVTVKGGGHVAQVY 253
V IRV VKGGGHVAQ+Y
Sbjct: 66 VDIRVRVKGGGHVAQIY 82
Score = 123 bits (297), Expect = 4e-28
Identities = 56/63 (88%), Positives = 61/63 (96%)
Frame = +1
Query: 256 IRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARXRYQK 435
IRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVADPRRCE KKFGGPGAR RYQK
Sbjct: 84 IRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQK 143
Query: 436 SYR 444
SYR
Sbjct: 144 SYR 146
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 78.6 bits (185), Expect = 1e-14
Identities = 48/145 (33%), Positives = 67/145 (46%)
Frame = +2
Query: 26 IQAVQVFGRKKTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 205
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 206 XIRVTVKGGGHVAQVYVSDKLFQRL*SPSTRNM*TKPQRRKSKTS*YNTIGVCWWLTXXX 385
I V VKG GHV Q+Y + + P + T CWW T
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEASEEIKDT----LTRPCWWFTPVA 133
Query: 386 XXXXXXXXXXXXXDTRNLTVKPSRK 460
TRN + KP +K
Sbjct: 134 MNPRNLQALVPVLTTRNHSSKPIKK 158
>BC064361-1|AAH64361.1| 1056|Homo sapiens pleckstrin homology domain
containing, family M (with RUN domain) member 1 protein.
Length = 1056
Score = 34.3 bits (75), Expect = 0.29
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -1
Query: 310 RLHISGRRRSEPLK*LV*YVNLCYMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQ 143
R+H+ GRRR E LK L Y+ LC + NHR + L E RF LQQ
Sbjct: 914 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 967
>AK074103-1|BAB84929.1| 628|Homo sapiens FLJ00174 protein protein.
Length = 628
Score = 34.3 bits (75), Expect = 0.29
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -1
Query: 310 RLHISGRRRSEPLK*LV*YVNLCYMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQ 143
R+H+ GRRR E LK L Y+ LC + NHR + L E RF LQQ
Sbjct: 486 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 539
>AJ002220-1|CAB91652.1| 926|Homo sapiens protein ( Homo sapiens B2
gene partial cDNA, clone B2E. ).
Length = 926
Score = 34.3 bits (75), Expect = 0.29
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -1
Query: 310 RLHISGRRRSEPLK*LV*YVNLCYMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQ 143
R+H+ GRRR E LK L Y+ LC + NHR + L E RF LQQ
Sbjct: 784 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 837
>AB002354-1|BAA20813.2| 1058|Homo sapiens KIAA0356 protein protein.
Length = 1058
Score = 34.3 bits (75), Expect = 0.29
Identities = 23/56 (41%), Positives = 28/56 (50%)
Frame = -1
Query: 310 RLHISGRRRSEPLK*LV*YVNLCYMTTTLDCXSDXNHREFFLAEQKDRFLKFVLQQ 143
R+H+ GRRR E LK L Y+ LC + NHR + L E RF LQQ
Sbjct: 916 RMHLIGRRR-EQLKLLGDYLGLCRSGALKELSKRLNHRNYLL-ESPHRFSVADLQQ 969
>BC054882-1|AAH54882.1| 204|Homo sapiens Unknown (protein for
IMAGE:6451327) protein.
Length = 204
Score = 29.9 bits (64), Expect = 6.3
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 313 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 396
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-3|CAI16232.1| 689|Homo sapiens novel protein protein.
Length = 689
Score = 29.9 bits (64), Expect = 6.3
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 313 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 396
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
>AL391827-2|CAI16231.1| 198|Homo sapiens novel protein protein.
Length = 198
Score = 29.9 bits (64), Expect = 6.3
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +1
Query: 313 ASKKEIKD-ILVQYDRSLLVADPRRCEPK 396
ASKK +K+ +++ YD + DP +C P+
Sbjct: 16 ASKKPLKEKVVLMYDEIFMTEDPSKCSPR 44
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,992,526
Number of Sequences: 237096
Number of extensions: 1667922
Number of successful extensions: 7381
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7380
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5533942988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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