Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0489
         (639 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3EPB9 Cluster: Putative permease; n=1; Leptospirillum ...    35   1.9  
UniRef50_UPI000155443F Cluster: PREDICTED: similar to hCG23215; ...    34   2.5  
UniRef50_Q873D6 Cluster: Related to a retinal short-chain dehydr...    33   4.4  
UniRef50_Q2UIH9 Cluster: Predicted transporter; n=1; Aspergillus...    33   5.8  
UniRef50_Q6TEI0 Cluster: Type I polyketide synthase; n=1; Strept...    33   7.7  

>UniRef50_A3EPB9 Cluster: Putative permease; n=1; Leptospirillum sp.
           Group II UBA|Rep: Putative permease - Leptospirillum sp.
           Group II UBA
          Length = 405

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 115 IWWYFTLNNKALYGVPSSLEICPKNG*YPPMHERLFVFSSS 237
           +W+ F    KAL   P S    P  G +PP+H    +F S+
Sbjct: 182 VWFAFRATGKALESPPVSTSASPTGGNFPPLHRTFLLFLSA 222


>UniRef50_UPI000155443F Cluster: PREDICTED: similar to hCG23215;
           n=2; Mammalia|Rep: PREDICTED: similar to hCG23215 -
           Ornithorhynchus anatinus
          Length = 1002

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
 Frame = -3

Query: 355 RVLRLTKSMHALGCEKQKTEENGVHSKRPTFDIGGDTHGLKKRKQTGARAWADIIH---- 188
           R L +  ++ A G E    E  GV ++       GD  GL   +Q GA  WA++ +    
Sbjct: 638 RHLDVIDALRAAGAELSPQELQGVGTELCRLAANGDVDGLMVWRQAGAD-WAEVGYTGQS 696

Query: 187 -FLGISPGRKGLHRAPCCSG*NTTRSRG 107
               +SPG   +H  PC S  + +R RG
Sbjct: 697 PLQVVSPGAAEVHTPPCLS-LHASRIRG 723


>UniRef50_Q873D6 Cluster: Related to a retinal short-chain
           dehydrogenase/reductase; n=4; Sordariomycetes|Rep:
           Related to a retinal short-chain dehydrogenase/reductase
           - Neurospora crassa
          Length = 357

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 88  SIAWATFHVIWWYF-TLNNKALYGVPSSLEI 177
           SIAWA+   + W F T+NN+  YG+P  +++
Sbjct: 53  SIAWASMITLSWIFITINNRIAYGLPREVDL 83


>UniRef50_Q2UIH9 Cluster: Predicted transporter; n=1; Aspergillus
           oryzae|Rep: Predicted transporter - Aspergillus oryzae
          Length = 619

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 213 APVCFLFFNPCVSPPMSNVGLFECTPFSSVFCFSHPRACMLLVSLNTRI 359
           APVCFL FN      +        + F+S +C+    A  L V+ NTRI
Sbjct: 364 APVCFLPFNRLKDRTLLGACFLAASLFASFYCWDLYLASYLQVTFNTRI 412


>UniRef50_Q6TEI0 Cluster: Type I polyketide synthase; n=1;
            Streptomyces diastaticus|Rep: Type I polyketide synthase
            - Streptomyces diastaticus
          Length = 3179

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
 Frame = -3

Query: 265  FDIGGDTHGLKKRKQTGARAWADIIHFLGISPGRKGLHRAPCCSG-----*NTTRSRGRL 101
            ++ G    GL++  + GA  WA++   L + PGR GLH A   +       +   +  RL
Sbjct: 1033 YEYGPAFQGLRRAWRLGAERWAEV--ELPVDPGRFGLHPALLDAALHPLLLDAGDAPVRL 1090

Query: 100  PMRWTDQVKSAVGGCLHECTRAPQTGSS 17
            P  W+     AVG         PQ   S
Sbjct: 1091 PFSWSGVALHAVGATALRVRLTPQGNDS 1118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,770,381
Number of Sequences: 1657284
Number of extensions: 15754608
Number of successful extensions: 35678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35672
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)