Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0489
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    28   0.99 
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    28   1.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   1.7  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   9.2  

>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 204 GRILSIFWAYLQGGRDSIERL 142
           GR++ + W+ LQG RD ++ L
Sbjct: 120 GRVVQLIWSRLQGNRDIVQHL 140


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 69  ADLTWSVHRMGNLPRDLVVFYPEQQGALWSPFLPGDMPKKWIISAHARA 215
           AD  W+VH   +     VV    Q+  +W+  LP D   ++++  H RA
Sbjct: 279 ADTQWNVHAARD---QWVVSTSSQKTIVWNLALPNDRAIEFMLHGHTRA 324


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = -1

Query: 597 KSTVIFTFVPL*LLTHASD*LETWXPCKNNVLHG*ADIYMSVGPPTPVAGALMM 436
           K TV+F+ V L L   AS  + T             DIY SV  PTP+ G+L++
Sbjct: 264 KDTVLFSLVTLDLEQRASAVITTIQSLPY-------DIYASVSIPTPLGGSLLL 310


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 90  GPTKLSRQLAVVCMNVPGHHKP 25
           GP+KL   +A +  N+P  HKP
Sbjct: 232 GPSKLDNLIANLRKNLPALHKP 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,869,125
Number of Sequences: 5004
Number of extensions: 63619
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)