Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0489
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152...    31   0.58 
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    31   1.0  
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876...    28   5.4  
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132...    27   9.5  
04_04_0319 + 24355275-24355401,24355504-24355603,24356271-243566...    27   9.5  

>06_01_0196 +
           1520015-1520191,1520483-1520527,1521851-1521910,
           1522246-1522358,1522432-1522642,1523087-1523133,
           1523211-1523369,1523521-1523624,1524300-1524634
          Length = 416

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 240 PCVSPPMSNVGLFECTPFSSVFCFSHPRACMLLVS 344
           PC +PPM+++G    TP     C    + C +LVS
Sbjct: 173 PCAAPPMASIGA-GSTPLHYAACGGEVKCCQILVS 206


>01_07_0016 -
           40476014-40476333,40476598-40476740,40476945-40479099,
           40479205-40480047,40480176-40480269,40480356-40481207,
           40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 54  KQPPTA----DLTWSVHRMGNLPRDLVVFYPEQQGALWSPFLPGDM 179
           +QPP      D+        + P DL +FY + QG +  PFL  D+
Sbjct: 479 QQPPVLYQNNDMDTKASGQASYPEDLTLFYLDPQGGMQGPFLGADI 524


>06_03_1488 +
           30484904-30485134,30485239-30487159,30487255-30487691,
           30487777-30487983
          Length = 931

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -3

Query: 313 EKQKTEENGVHSKRPTFDIGGDTHGLKKR--KQTGARAWADIIHFLGISPGRK 161
           E   TEE+     R  FD+  +   +      +TG+  W  ++   G+SPGRK
Sbjct: 804 ETYNTEEDAA-DHRMLFDLANEALEITMMGSTKTGSSLWRWVVDSTGVSPGRK 855


>12_01_0179 -
           1319291-1319332,1319884-1320579,1322759-1323207,
           1323291-1324903,1324991-1325077,1326983-1327251
          Length = 1051

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 193 IHFLGISPGRKGLHRAPCCSG*NTTRSRGRLPMRWTD 83
           + FLG++  ++ LH++P  +   TTR+RG+  M   D
Sbjct: 817 LQFLGLTVKKQSLHKSPTTT---TTRTRGKSVMSHRD 850


>04_04_0319 +
           24355275-24355401,24355504-24355603,24356271-24356618,
           24356705-24356745,24356821-24356867,24358043-24358107,
           24358186-24358308,24358397-24358534,24358658-24358899,
           24358988-24359118,24359363-24359388,24359746-24359882,
           24359964-24360376,24360514-24360550,24360643-24360667,
           24360755-24360887,24361241-24361340,24362015-24362115,
           24362998-24363084
          Length = 806

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +1

Query: 400 INTIISHPHKDSHH*RPRNWCRGSNTHINISLSMKYIIFTRXPSFKSIGCMGQ*L*RNKR 579
           I+++    H D  H R     R + T        + ++  +     +  C+GQ L   KR
Sbjct: 641 IDSMEEDTHMDEQHARDEGLLRSTRTRTVARYFHQLLVDQKCQQRNNSVCLGQALEGTKR 700

Query: 580 KNHCRFY 600
           K   RF+
Sbjct: 701 KTSARFF 707


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,954,029
Number of Sequences: 37544
Number of extensions: 465338
Number of successful extensions: 1085
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)