Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0489
         (639 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL049563-3|CAI43017.1|  973|Homo sapiens transient receptor pote...    31   4.6  
AF054568-1|AAF00002.1|  973|Homo sapiens transient receptor pote...    31   4.6  
AC005191-1|AAC24563.1|  567|Homo sapiens WUGSC:H_DJ269O05.1 prot...    31   4.6  
AB209258-1|BAD92495.1|  725|Homo sapiens transient receptor pote...    31   4.6  

>AL049563-3|CAI43017.1|  973|Homo sapiens transient receptor
           potential cation channel, subfamily C, member 5 protein.
          Length = 973

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 150 LWSPFLPGDMPKKWIISAHARAPVCFLFFNPCVS---PPMSNVGLFECTPFSSVFC 308
           LW    PG   K W++       + FLF    ++    P SN+GLF   PF    C
Sbjct: 314 LWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFIKKPFIKFIC 369


>AF054568-1|AAF00002.1|  973|Homo sapiens transient receptor
           potential calcium channel 5 protein.
          Length = 973

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 150 LWSPFLPGDMPKKWIISAHARAPVCFLFFNPCVS---PPMSNVGLFECTPFSSVFC 308
           LW    PG   K W++       + FLF    ++    P SN+GLF   PF    C
Sbjct: 314 LWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFIKKPFIKFIC 369


>AC005191-1|AAC24563.1|  567|Homo sapiens WUGSC:H_DJ269O05.1
           protein.
          Length = 567

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 150 LWSPFLPGDMPKKWIISAHARAPVCFLFFNPCVS---PPMSNVGLFECTPFSSVFC 308
           LW    PG   K W++       + FLF    ++    P SN+GLF   PF    C
Sbjct: 314 LWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFIKKPFIKFIC 369


>AB209258-1|BAD92495.1|  725|Homo sapiens transient receptor
           potential cation channel, subfamily C, member 5 variant
           protein.
          Length = 725

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +3

Query: 150 LWSPFLPGDMPKKWIISAHARAPVCFLFFNPCVS---PPMSNVGLFECTPFSSVFC 308
           LW    PG   K W++       + FLF    ++    P SN+GLF   PF    C
Sbjct: 315 LWYDGFPGWRRKHWVVKLLTCMTIGFLFPMLSIAYLISPRSNLGLFIKKPFIKFIC 370


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,548,108
Number of Sequences: 237096
Number of extensions: 2598216
Number of successful extensions: 9132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9125
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)