Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0489
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical p...    28   4.9  
AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchang...    28   6.5  
Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U23515-13|AAK21453.1|  823|Caenorhabditis elegans Hypothetical
           protein R144.2a protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
 Frame = +3

Query: 162 FLPGDMPKKWIISAHARAPVCFLFFNPC--VSPPMSNVGLFECTPFSSVFCFSHPRACML 335
           F P  +    +I +HA APV      P   V PP+S        P SS   F HP+    
Sbjct: 295 FRPKTLKPTSVIGSHAFAPVAAPI-RPMIPVPPPVSVAPFVPAPPLSSAPPFQHPQQHHP 353

Query: 336 LVSLNTRI*D*LYPPASLGI*N*HYYFSPPQRFSSLTPPQLV*GVQH 476
            +           PP   G+   +++ SPPQ  + + P Q     QH
Sbjct: 354 QLP---------PPPVHQGMGRGYHHNSPPQDPAPIVPVQAPPPQQH 391


>AF016420-5|AAB65309.1|  651|Caenorhabditis elegans Na/ca exchangers
           protein 9 protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 287 CAFEETXI-RHWWGHTRVEEEKTNRRSCMGGYYPFFGH 177
           C+ EE  I + W    + E  K N+ SC GG Y  + H
Sbjct: 2   CSSEECLIDKSWTSEEKCEYIKCNQDSCEGGGYLTWSH 39


>Z82265-5|CAB05175.1|  334|Caenorhabditis elegans Hypothetical
           protein F02H6.7 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 117 DHVEGCPCDGPTKLSRQLAVVCMNVPGHHKPEA 19
           D ++ CPC G T++S+       N P  + P A
Sbjct: 96  DGLKNCPCVGSTRISQPCGTQACNYPRTNGPGA 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,281,314
Number of Sequences: 27780
Number of extensions: 376086
Number of successful extensions: 984
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)