Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0489
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g37150.4 68414.m04644 holocarboxylase synthetase 2 (HCS2.d) i...    31   0.49 
At1g37150.3 68414.m04643 holocarboxylase synthetase 2 (HCS2.d) i...    31   0.49 
At1g37150.2 68414.m04642 holocarboxylase synthetase 2 (HCS2.d) i...    31   0.49 
At1g37150.1 68414.m04641 holocarboxylase synthetase 2 (HCS2.d) i...    31   0.49 
At1g11950.1 68414.m01381 transcription factor jumonji (jmjC) dom...    28   4.5  
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ...    28   6.0  

>At1g37150.4 68414.m04644 holocarboxylase synthetase 2 (HCS2.d)
           identical to holocarboxylase synthetase hcs2.d
           [Arabidopsis thaliana] GI:19698373; contains
           non-consensus GG acceptor splice sites; contains Pfam
           profile PF03099: Biotin/lipoate A/B protein ligase
           family; contains TIGRfam profile TIGR00121:
           biotin--acetyl-CoA-carboxylase ligase;
          Length = 286

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +2

Query: 119 GGILP*TTRRSMESLPPWRYAQKMDNIRPCTSACLFSLLQPVCVPTNV 262
           GGIL  +T RS + L        +DN +P T  CL ++L+ VC P+N+
Sbjct: 141 GGILCTSTYRSRKFLVSVGVGLNVDNEQPTT--CLNAVLKDVCPPSNL 186


>At1g37150.3 68414.m04643 holocarboxylase synthetase 2 (HCS2.d)
           identical to holocarboxylase synthetase hcs2.d
           [Arabidopsis thaliana] GI:19698373; contains
           non-consensus GG acceptor splice sites; contains Pfam
           profile PF03099: Biotin/lipoate A/B protein ligase
           family; contains TIGRfam profile TIGR00121:
           biotin--acetyl-CoA-carboxylase ligase;
          Length = 297

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +2

Query: 119 GGILP*TTRRSMESLPPWRYAQKMDNIRPCTSACLFSLLQPVCVPTNV 262
           GGIL  +T RS + L        +DN +P T  CL ++L+ VC P+N+
Sbjct: 184 GGILCTSTYRSRKFLVSVGVGLNVDNEQPTT--CLNAVLKDVCPPSNL 229


>At1g37150.2 68414.m04642 holocarboxylase synthetase 2 (HCS2.d)
           identical to holocarboxylase synthetase hcs2.d
           [Arabidopsis thaliana] GI:19698373; contains
           non-consensus GG acceptor splice sites; contains Pfam
           profile PF03099: Biotin/lipoate A/B protein ligase
           family; contains TIGRfam profile TIGR00121:
           biotin--acetyl-CoA-carboxylase ligase;
          Length = 329

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +2

Query: 119 GGILP*TTRRSMESLPPWRYAQKMDNIRPCTSACLFSLLQPVCVPTNV 262
           GGIL  +T RS + L        +DN +P T  CL ++L+ VC P+N+
Sbjct: 184 GGILCTSTYRSRKFLVSVGVGLNVDNEQPTT--CLNAVLKDVCPPSNL 229


>At1g37150.1 68414.m04641 holocarboxylase synthetase 2 (HCS2.d)
           identical to holocarboxylase synthetase hcs2.d
           [Arabidopsis thaliana] GI:19698373; contains
           non-consensus GG acceptor splice sites; contains Pfam
           profile PF03099: Biotin/lipoate A/B protein ligase
           family; contains TIGRfam profile TIGR00121:
           biotin--acetyl-CoA-carboxylase ligase;
          Length = 214

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = +2

Query: 119 GGILP*TTRRSMESLPPWRYAQKMDNIRPCTSACLFSLLQPVCVPTNV 262
           GGIL  +T RS + L        +DN +P T  CL ++L+ VC P+N+
Sbjct: 101 GGILCTSTYRSRKFLVSVGVGLNVDNEQPTT--CLNAVLKDVCPPSNL 146


>At1g11950.1 68414.m01381 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain; non-consensus TG acceptor splice site at
           exon boundary 79262
          Length = 880

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 114 DLVVFYPEQQGALWSPFLPGDMPK 185
           D +V Y E  GALW  F   D+PK
Sbjct: 718 DEIVVYDETSGALWDIFKREDVPK 741


>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
           protein, putative (SR1) identical to partial sequence of
           ethylene-induced calmodulin-binding protein GI:11545505
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
           motif, and PF00023: Ankyrin repeat
          Length = 1032

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 301 TEENGVHSKRPTFDIGGDTHGLKKRKQTGARAWADII 191
           T+ + +  K  T +  G T+GLK RK   ++ W +I+
Sbjct: 258 TDSSIMVDKSKTINSPGVTNGLKNRKSIDSQTWEEIL 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,431,966
Number of Sequences: 28952
Number of extensions: 353330
Number of successful extensions: 834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)