Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0488
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    61   6e-12
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   1.5  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   2.0  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   2.7  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   2.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 61.3 bits (142), Expect = 6e-12
 Identities = 26/57 (45%), Positives = 39/57 (68%)
 Frame = +3

Query: 18  SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
           +++HGD  Q ERE  +  F+TG  +VL+ T + ARG+D++ V  VINYDLP + + Y
Sbjct: 437 TSIHGDRYQSEREKALLDFKTGHRKVLVATGVAARGLDIKDVQHVINYDLPKSIDEY 493


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 437 ILLCGNNKSKFPLMITDFFSRSFLILYP*QFFTFNFCI 550
           IL   N  S+ P  + D ++  FL  YP  F  F F +
Sbjct: 328 ILSIVNTCSQIPSEVEDKYTTYFLNTYPHLFNFFEFSV 365


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 150 RRKLAVHQYHVPINQW*SRHEKSQYET 70
           RRK A  +    +  W + H+K+ Y T
Sbjct: 87  RRKNATRESTATLKAWLNEHKKNPYPT 113


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 1   CVTLLYLLCME 33
           C+TLLY++C E
Sbjct: 322 CMTLLYIICNE 332


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 1   CVTLLYLLCME 33
           C+TLLY++C E
Sbjct: 322 CMTLLYIICNE 332


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,788
Number of Sequences: 336
Number of extensions: 3010
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)