Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0488
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 8e-25
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 8e-21
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 9e-11
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 59 2e-09
SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 59 3e-09
SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19) 59 3e-09
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 59 3e-09
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 59 3e-09
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 58 4e-09
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 58 6e-09
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 1e-08
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 56 2e-08
SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38) 55 5e-08
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 53 2e-07
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 52 5e-07
SB_32980| Best HMM Match : DEAD (HMM E-Value=0) 51 9e-07
SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27) 49 3e-06
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11) 46 3e-05
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19) 42 3e-04
SB_23184| Best HMM Match : Helicase_C (HMM E-Value=7.8e-23) 42 5e-04
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 41 0.001
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 39 0.003
SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05) 39 0.003
SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18) 39 0.004
SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017) 38 0.006
SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017) 38 0.006
SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27) 37 0.015
SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20) 35 0.060
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21) 30 1.3
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4) 29 3.0
>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 110 bits (265), Expect = 8e-25
Identities = 50/62 (80%), Positives = 58/62 (93%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
+D TVS+MHGDM Q+ER++IM++FR+GSSRVLITTDLLARGIDV QVS VINYDLPSNRE
Sbjct: 353 KDHTVSSMHGDMSQKERDIIMKEFRSGSSRVLITTDLLARGIDVHQVSLVINYDLPSNRE 412
Query: 183 NY 188
NY
Sbjct: 413 NY 414
>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 97.5 bits (232), Expect = 8e-21
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+FTV++MHGDM Q+ERE IM+ FR G SRVLI+TD+ ARG+DVQQVS VINYDLP+NRE
Sbjct: 260 NFTVASMHGDMPQKEREAIMKDFRAGQSRVLISTDVWARGLDVQQVSLVINYDLPNNREL 319
Query: 186 Y 188
Y
Sbjct: 320 Y 320
Score = 35.1 bits (77), Expect = 0.046
Identities = 16/27 (59%), Positives = 20/27 (74%)
Frame = +2
Query: 257 DRRALKDIEDFYHTSIVEMPSDVANLI 337
D R L+DIE +Y T I EMP +VA+LI
Sbjct: 344 DIRILRDIEQYYSTQIDEMPMNVADLI 370
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 64.1 bits (149), Expect = 9e-11
Identities = 27/57 (47%), Positives = 40/57 (70%)
Frame = +3
Query: 18 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+++HGD QRERE +R FR G + +L+ T + ARG+D+ V VIN+DLP++ E Y
Sbjct: 1128 TSIHGDRSQREREEALRTFRCGDTPILVATAVAARGLDIPNVKHVINFDLPTDIEEY 1184
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 61.7 bits (143), Expect = 5e-10
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F +++HGD Q+ERE + FR G VLI T++ ARG+D+ V VIN+DLPS+ + Y
Sbjct: 987 FPTTSIHGDRLQQEREEALDDFRKGRCPVLIATNVAARGLDIDDVKHVINFDLPSDIDEY 1046
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/58 (46%), Positives = 38/58 (65%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
V +H D Q +R+ I++ FRTG VLI T+L+ RGID + V+ VINYD P++ Y
Sbjct: 410 VDVIHSDRTQAQRDNIVKSFRTGKIWVLIATELMGRGIDFKGVNLVINYDFPTSAVAY 467
>SB_59075| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 445
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
A+HGD Q ER +R+F G+ VL+ TD+ ++G+D + VIN+D+P + ENY
Sbjct: 116 AIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENY 171
>SB_55073| Best HMM Match : Helicase_C (HMM E-Value=1.3e-19)
Length = 212
Score = 58.8 bits (136), Expect = 3e-09
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
A+HGD Q ER +R+F G+ VL+ TD+ ++G+D + VIN+D+P + ENY
Sbjct: 116 AIHGDKSQEERVHAIREFHQGNKDVLVATDVASKGLDFPDIQHVINFDMPEDIENY 171
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F+ +H M Q R + FR G R L+ +DL RGID+Q V+ VIN+D P N E Y
Sbjct: 316 FSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVVINFDFPKNSETY 375
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F+ +H M Q R + FR G R L+ +DL RGID+Q V+ VIN+D P N E Y
Sbjct: 316 FSCFYIHARMSQSHRNRVFHDFRQGHCRNLVCSDLFTRGIDIQSVNVVINFDFPKNSETY 375
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 58.4 bits (135), Expect = 4e-09
Identities = 24/62 (38%), Positives = 38/62 (61%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
+ F + +HG +Q +RE + + GS +L+ TD+ RGID++ VS VINYD+ E
Sbjct: 307 KKFRATTLHGGRNQEQREFALSSLKGGSKDILVATDVAGRGIDIKDVSHVINYDMAKTIE 366
Query: 183 NY 188
+Y
Sbjct: 367 DY 368
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 58.0 bits (134), Expect = 6e-09
Identities = 24/56 (42%), Positives = 41/56 (73%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
V+ + G++ +R ++ +FR G ++LITT++ ARGIDV+QV+ VINYD+P + +
Sbjct: 371 VALLSGEITIEQRIAVLERFRLGKEKLLITTNVSARGIDVEQVTLVINYDMPMDMQ 426
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 56.8 bits (131), Expect = 1e-08
Identities = 22/51 (43%), Positives = 38/51 (74%)
Frame = +3
Query: 36 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
++Q +RE + F+TG +R+LI TD+ +RG+D++ ++ VINYD P + E+Y
Sbjct: 76 LEQYDREQALDDFKTGLARILIATDVASRGLDIKDITYVINYDFPRHIEDY 126
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 56.0 bits (129), Expect = 2e-08
Identities = 21/55 (38%), Positives = 37/55 (67%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+HGD+ Q++REV ++ FR G R L+ TD+ ARG+D+ ++ V+ + P + + Y
Sbjct: 334 LHGDIPQKQREVTLKSFREGKFRCLVATDVAARGLDIPEIDLVVQCEPPKDVDAY 388
>SB_48046| Best HMM Match : DEAD (HMM E-Value=4e-38)
Length = 475
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/62 (35%), Positives = 38/62 (61%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
++F +H M Q ER +QF+ R+L+ T+L RG+D+++V+ V NYD+P + +
Sbjct: 358 QNFPAICIHRGMKQEERLARYQQFKNFEKRMLVATNLFGRGMDIERVNIVFNYDMPEDSD 417
Query: 183 NY 188
Y
Sbjct: 418 TY 419
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F S +H + Q R +++ FR G +L+ TD+ +RG+D +V+ VINYDLP E Y
Sbjct: 357 FHASGLHSEKPQDYRFKLVKAFRDGKVDILVATDVASRGLDFPEVTHVINYDLPDTIECY 416
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 51.6 bits (118), Expect = 5e-07
Identities = 19/59 (32%), Positives = 40/59 (67%)
Frame = +3
Query: 12 TVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
T +H + Q ER + +F++G+ ++L+ TD+ +RG+D+ QV V+N ++P++ ++Y
Sbjct: 273 TCVGLHSLLSQGERLAALARFKSGTIKILVATDVASRGLDIPQVELVVNSNIPADPKDY 331
>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
Length = 985
Score = 50.8 bits (116), Expect = 9e-07
Identities = 23/53 (43%), Positives = 33/53 (62%)
Frame = +3
Query: 30 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
G Q +R M + ++ R+LI+TDL ARGID + V+ V+N D+P N E Y
Sbjct: 246 GSQTQAKRLEAMEKLKSFHCRILISTDLTARGIDAENVNLVVNMDVPHNGETY 298
>SB_37956| Best HMM Match : Helicase_C (HMM E-Value=1.5e-27)
Length = 331
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/54 (42%), Positives = 35/54 (64%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 176
+ A+HG M + R I FR S +L+ TD++ARG+D+ +V+ VI YD PS+
Sbjct: 118 IMALHGKM-KSNRHKIFDSFRKLESGILVCTDVMARGVDIPEVNWVIQYDPPSS 170
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/55 (34%), Positives = 35/55 (63%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+H M QR+R + +F+ ++ +L+ TD+ ARG+D+ + VI+Y +P + E Y
Sbjct: 486 LHASMQQRQRLKNLDRFKASNTGLLLATDVAARGLDIANIEHVIHYQVPKDPEVY 540
>SB_21307| Best HMM Match : Helicase_C (HMM E-Value=1.7e-11)
Length = 87
Score = 45.6 bits (103), Expect = 3e-05
Identities = 16/41 (39%), Positives = 29/41 (70%)
Frame = +3
Query: 66 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+QF+ R+L+ T+L RG+D+++V+ V NYD+P + + Y
Sbjct: 6 QQFKNFEKRMLVATNLFGRGMDIERVNIVFNYDMPEDSDTY 46
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
D V +HG Q++R +F S +L+ TD+ ARG+D+ +V ++ YD + +
Sbjct: 842 DLPVLEIHGKQKQQKRTTTFFEFCNAKSGILLCTDVAARGLDIPEVDWIVQYDPADDPKE 901
Query: 186 Y 188
Y
Sbjct: 902 Y 902
>SB_21060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 30 GDMDQREREVIMRQFRTGSS-RVLITTDLLARGIDVQQVSCVINYDLPSN 176
G M QRE+E ++ +FR GS ++I T + G+D+ S VI YD+ N
Sbjct: 597 GGMTQREQEEVIAKFRAGSECNIIIATTVAEEGLDIDDCSYVIRYDMMGN 646
>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 36 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 176
M Q+E+E+I+ +F+ G +LI T + G+D++ S VI YD N
Sbjct: 982 MSQQEQELIIEEFKKGVVNILIATSVAEEGLDIKDCSFVIRYDTYGN 1028
>SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)
Length = 1463
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +3
Query: 48 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 176
E+EVI++ FRTG ++LI+T +L G+DV + V+ +D N
Sbjct: 605 EQEVILKSFRTGRIKLLISTSVLEEGLDVPVCNLVVRFDSTMN 647
>SB_23184| Best HMM Match : Helicase_C (HMM E-Value=7.8e-23)
Length = 226
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 164
V A+H +D E++++M +F G S+VLI+T ++ G+DV + ++ D
Sbjct: 95 VEALHSRLDSSEKDLVMDRFIKGESQVLISTTVIEVGVDVPNATMMVIMD 144
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 30 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
G+ R R +F+ ++ +L+ TD+ +RG+D VS VIN+D P++ +Y
Sbjct: 728 GNSGTRIRCERFEKFQNKTADILVCTDIASRGLDTSDVSHVINFDFPNSMVDY 780
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/51 (33%), Positives = 31/51 (60%)
Frame = +3
Query: 18 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 170
S ++ +DQ R + + +F+ + V++ TD+ ARGID+ + VIN+ P
Sbjct: 503 SYVYSSLDQTARTINVGKFQHKKTMVMVVTDVAARGIDIPMLDNVINFHFP 553
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 113
DF V+ +HGDMDQ ER ++ QF+ +L+ TD+
Sbjct: 753 DFEVALLHGDMDQFERSKVLGQFKKREIPILVATDV 788
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 27 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
H M +R + ++F +G R + T G+D V +I+Y++P + E+Y
Sbjct: 819 HAGMSAAQRRKVQKRFMSGELRAVAATVAFGMGLDKSDVRAIIHYNMPKSFESY 872
>SB_35369| Best HMM Match : Helicase_C (HMM E-Value=6.1e-05)
Length = 584
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQV 143
+HG++ Q +R +++F+ G +L+ TDL ARG+D+ V
Sbjct: 38 LHGNLTQLQRLEALQKFKNGEVDILVATDLAARGLDITGV 77
>SB_8614| Best HMM Match : Helicase_C (HMM E-Value=1.6e-18)
Length = 282
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 18 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
S+ M ++E +++ FR +L+ T ++ G+DV + + V+ +D P N +Y
Sbjct: 122 SSSDTQMGSTKQEKVLKMFRKHQINLLVATSVVEEGLDVPKCNFVVRFDFPQNFRSY 178
>SB_58021| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 111 LLARGIDVQQVSCVINYDLPSNRENY 188
L RGID+Q V+ VIN+D P N E Y
Sbjct: 2 LFTRGIDIQSVNVVINFDFPKNSETY 27
>SB_24297| Best HMM Match : Helicase_C (HMM E-Value=0.017)
Length = 91
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 111 LLARGIDVQQVSCVINYDLPSNRENY 188
L RGID+Q V+ VIN+D P N E Y
Sbjct: 2 LFTRGIDIQSVNVVINFDFPKNSETY 27
>SB_41683| Best HMM Match : DEAD (HMM E-Value=1.5e-27)
Length = 559
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 39 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
D + +R FRTG ++L+ T+ RG+D +++ V ++P N E Y
Sbjct: 463 DPTKYHKFLRDFRTGQIQLLVGTEETVRGLDFKELDHVYLMEVPKNVEEY 512
>SB_30394| Best HMM Match : Helicase_C (HMM E-Value=1e-20)
Length = 556
Score = 34.7 bits (76), Expect = 0.060
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 39 DQREREVIMRQFRTGSS-RVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
D ++EV+ ++ S RV++ T L G+D+ V +I++ +PS E+Y
Sbjct: 295 DSIQKEVLGEFIKSNSKIRVVVATCALGMGVDIPDVDHIIHFGIPSEVEHY 345
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 134
V+ H + ER++I FR G+ RVL+ T L G+++
Sbjct: 557 VAFHHAGLTFDERDIIEGAFRQGTIRVLVATSTLCSGVNL 596
>SB_20654| Best HMM Match : Helicase_C (HMM E-Value=2.3e-21)
Length = 1728
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 36 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 164
+ Q+E+ ++ +FR G L++T + G+D+ V ++ +D
Sbjct: 564 LSQKEQLEVVHRFRMGGYNTLVSTCVGEEGLDIGDVDLIVCFD 606
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +3
Query: 27 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
H + +R+ + +++ G V+ T G+D V V ++ LP + E Y
Sbjct: 279 HAGLKSDKRDKVQQEWMEGKVAVICATISFGMGVDKGDVRFVAHWSLPQSMEGY 332
>SB_35874| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4)
Length = 494
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +3
Query: 39 DQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
D ++EV+ + + RV + T +L + + V +I+Y +PS E+
Sbjct: 8 DYIQKEVLEEFTKPNNIRVAVATRVLGFRVSILHVESLIHYGIPSEEEH 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,029
Number of Sequences: 59808
Number of extensions: 344938
Number of successful extensions: 630
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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