Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0488
(614 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 106 1e-23
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 106 1e-23
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 105 2e-23
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 100 9e-22
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 81 6e-16
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 72 4e-13
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 72 4e-13
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 72 4e-13
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 71 5e-13
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 71 6e-13
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 71 6e-13
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 70 1e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 69 2e-12
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 68 6e-12
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 67 1e-11
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 65 3e-11
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 65 4e-11
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 64 9e-11
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 62 3e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 62 3e-10
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 62 3e-10
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 60 9e-10
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 60 9e-10
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 60 1e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 60 2e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 60 2e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 59 2e-09
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 59 3e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 59 3e-09
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 58 6e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 58 6e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 58 6e-09
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 57 1e-08
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 56 1e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 55 3e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 55 4e-08
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 54 1e-07
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 53 2e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 52 3e-07
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 52 4e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 50 9e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 50 1e-06
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 50 2e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 49 3e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 49 3e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 48 4e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 48 7e-06
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 48 7e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 48 7e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 47 9e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 46 2e-05
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 46 2e-05
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 46 3e-05
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 44 1e-04
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 43 1e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 43 1e-04
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 43 2e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 6e-04
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 41 7e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 40 0.001
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 39 0.002
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 39 0.003
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 38 0.004
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 37 0.009
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 37 0.012
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 36 0.028
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 35 0.037
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 34 0.065
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 34 0.086
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.11
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 32 0.26
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.35
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 32 0.35
At4g37020.1 68417.m05244 expressed protein 26 0.66
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 30 1.1
At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domai... 30 1.1
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 29 1.9
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 29 3.2
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 29 3.2
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 28 5.7
At1g01770.1 68414.m00096 expressed protein 27 7.5
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 106 bits (255), Expect = 1e-23
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
RD TVSA HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ E
Sbjct: 301 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 360
Query: 183 NYXXXXXXXXXXXXXXXXXNFVT 251
NY NFVT
Sbjct: 361 NYLHRIGRSGRFGRKGVAINFVT 383
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 257 DRRALKDIEDFYHTSIVEMPSDVANLI 337
D R L DI+ FY+ + E+PS+VA+L+
Sbjct: 386 DERMLFDIQKFYNVVVEELPSNVADLL 412
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 106 bits (255), Expect = 1e-23
Identities = 53/83 (63%), Positives = 59/83 (71%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
RD TVSA HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ E
Sbjct: 301 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 360
Query: 183 NYXXXXXXXXXXXXXXXXXNFVT 251
NY NFVT
Sbjct: 361 NYLHRIGRSGRFGRKGVAINFVT 383
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 257 DRRALKDIEDFYHTSIVEMPSDVANLI 337
D+R L DI+ FY+ + E+PS+VA+L+
Sbjct: 386 DQRMLFDIQKFYNVVVEELPSNVADLL 412
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 105 bits (252), Expect = 2e-23
Identities = 52/83 (62%), Positives = 59/83 (71%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
RD TVSA HGDMDQ R++IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ E
Sbjct: 303 RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPE 362
Query: 183 NYXXXXXXXXXXXXXXXXXNFVT 251
NY NF+T
Sbjct: 363 NYLHRIGRSGRFGRKGVAINFMT 385
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +2
Query: 257 DRRALKDIEDFYHTSIVEMPSDVANLI 337
D R + DI+ FY+ + E+PS+VA+L+
Sbjct: 388 DERMMADIQRFYNVVVEELPSNVADLL 414
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 100 bits (239), Expect = 9e-22
Identities = 46/61 (75%), Positives = 54/61 (88%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+FTVS+MHGDM Q+ER+ IM +FR+G SRVLITTD+ ARGIDVQQVS VINYDLP+NRE
Sbjct: 298 NFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNREL 357
Query: 186 Y 188
Y
Sbjct: 358 Y 358
Score = 33.9 bits (74), Expect = 0.086
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +2
Query: 257 DRRALKDIEDFYHTSIVEMPSDVANLI 337
D + L+DIE +Y T I EMP +VA+LI
Sbjct: 382 DIKILRDIEQYYSTQIDEMPMNVADLI 408
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 81.0 bits (191), Expect = 6e-16
Identities = 39/61 (63%), Positives = 48/61 (78%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+F VS+MHGD Q+ER+ IM QFR+ SRVLI +D+ ARGIDVQ VS VINYD+P+N E
Sbjct: 285 NFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPEL 344
Query: 186 Y 188
Y
Sbjct: 345 Y 345
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 254 TDRRALKDIEDFYHTSIVEMPSDV 325
+D + LKDIE Y T I EMP+D+
Sbjct: 368 SDMKDLKDIERHYGTKIREMPADL 391
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 71.7 bits (168), Expect = 4e-13
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E
Sbjct: 425 RQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 183 NY 188
+Y
Sbjct: 485 DY 486
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 71.7 bits (168), Expect = 4e-13
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E
Sbjct: 425 RQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 183 NY 188
+Y
Sbjct: 485 DY 486
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 71.7 bits (168), Expect = 4e-13
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E
Sbjct: 425 RQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 183 NY 188
+Y
Sbjct: 485 DY 486
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 71.3 bits (167), Expect = 5e-13
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+ ARG+DV+ + V+NYD P+ E
Sbjct: 496 RTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPNGVE 555
Query: 183 NY 188
+Y
Sbjct: 556 DY 557
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 70.9 bits (166), Expect = 6e-13
Identities = 27/61 (44%), Positives = 47/61 (77%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++
Sbjct: 432 EFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD 491
Query: 186 Y 188
Y
Sbjct: 492 Y 492
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 70.9 bits (166), Expect = 6e-13
Identities = 27/61 (44%), Positives = 47/61 (77%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++
Sbjct: 432 EFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD 491
Query: 186 Y 188
Y
Sbjct: 492 Y 492
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 70.1 bits (164), Expect = 1e-12
Identities = 27/60 (45%), Positives = 45/60 (75%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F + +HGD Q+EREV +R F+TG + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 430 FPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 489
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R F +HGD Q ER+ ++ QFR+G S VLI TD+ ARG+D++ + VINYD P+ E
Sbjct: 702 RHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVE 761
Query: 183 NY 188
+Y
Sbjct: 762 DY 763
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 67.7 bits (158), Expect = 6e-12
Identities = 25/56 (44%), Positives = 41/56 (73%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
A+HGD Q ER+ ++ +F++G S ++ TD+ ARG+DV+ + CV+NYD P+ E+Y
Sbjct: 439 AIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDY 494
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 66.9 bits (156), Expect = 1e-11
Identities = 25/60 (41%), Positives = 46/60 (76%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F +++HGD Q+EREV ++ F++G + +L+ TD+ ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 443 FPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDY 502
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 65.3 bits (152), Expect = 3e-11
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R F A+HGD+ Q +RE + FR G +L+ TD+ ARG+DV V +I+Y+LP+N E
Sbjct: 371 RSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTE 430
Query: 183 NY 188
+
Sbjct: 431 TF 432
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 64.9 bits (151), Expect = 4e-11
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
++HGD Q ER+ ++ +FR+G S ++ TD+ ARG+DV+ V VINYD P + E+Y
Sbjct: 373 SIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDY 428
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 63.7 bits (148), Expect = 9e-11
Identities = 26/62 (41%), Positives = 41/62 (66%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
+ + A+HGD+ Q +RE + FR G+ +L+ TD+ ARG+DV V VI+Y+LP+N E
Sbjct: 383 KSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTE 442
Query: 183 NY 188
+
Sbjct: 443 TF 444
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+F +H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + +
Sbjct: 312 NFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADT 371
Query: 186 Y 188
Y
Sbjct: 372 Y 372
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+F +H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + +
Sbjct: 229 NFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADT 288
Query: 186 Y 188
Y
Sbjct: 289 Y 289
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/61 (40%), Positives = 39/61 (63%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+F +H M Q ER + F+ G R+L+ TDL+ RGID+++V+ VINYD+P + +
Sbjct: 312 NFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADT 371
Query: 186 Y 188
Y
Sbjct: 372 Y 372
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 60.5 bits (140), Expect = 9e-10
Identities = 26/55 (47%), Positives = 36/55 (65%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+H D+ ERE + QFR G VLI TD++ARG+D + ++CVINYD P + Y
Sbjct: 410 IHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAY 464
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 60.5 bits (140), Expect = 9e-10
Identities = 24/58 (41%), Positives = 40/58 (68%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
F V+A+HGD DQ R +++F++G VLI TD+ ARG+D++ + V+NYD+ + +
Sbjct: 498 FKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMD 555
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
A+HG DQ +RE + F+ G VL+ TD+ ++G+D + VINYD+P+ ENY
Sbjct: 426 AIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENY 481
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
A+HGD+ Q +RE + FR G VL+ TD+ +RG+D+ V VI+Y+LP++ E +
Sbjct: 379 ALHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETF 434
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/60 (41%), Positives = 38/60 (63%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+ V+ +HG Q +RE+ + FR VL+ TD++ RGID+ V+ VINYD+P + E Y
Sbjct: 601 YRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMY 660
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/58 (39%), Positives = 45/58 (77%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
+ V+++HG++ + +R+ I+++F+ ++VLI TD++ARG D Q+V+ V+NY+LP+ E
Sbjct: 365 YDVTSVHGNLTESDRDKIVKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y
Sbjct: 398 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETY 452
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 58.8 bits (136), Expect = 3e-09
Identities = 26/55 (47%), Positives = 33/55 (60%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y
Sbjct: 398 IHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETY 452
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 57.6 bits (133), Expect = 6e-09
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
A+HG DQ +R+ + F+ G VL+ TD+ ++G+D + VINYD+P ENY
Sbjct: 377 AIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENY 432
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 57.6 bits (133), Expect = 6e-09
Identities = 25/55 (45%), Positives = 34/55 (61%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+H M Q R + +FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 391 IHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESY 445
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 57.6 bits (133), Expect = 6e-09
Identities = 25/55 (45%), Positives = 34/55 (61%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+H M Q R + +FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 391 IHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESY 445
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 56.8 bits (131), Expect = 1e-08
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+H M Q R + FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y
Sbjct: 421 IHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESY 475
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 56.4 bits (130), Expect = 1e-08
Identities = 22/62 (35%), Positives = 40/62 (64%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R + MHGD+ + R ++++F+ G +VL+T +L ARG+DV + V+N +LP++
Sbjct: 430 RGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAV 489
Query: 183 NY 188
+Y
Sbjct: 490 HY 491
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 55.2 bits (127), Expect = 3e-08
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F + G M Q +R + +F+ G +L+ TD+ +RG+D+ V VINYD+P+N ++Y
Sbjct: 285 FRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDY 344
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.8 bits (126), Expect = 4e-08
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+HG M+Q +R F+T VL++TD+ ARG+D +V C+I YD P Y
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEY 433
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 53.6 bits (123), Expect = 1e-07
Identities = 21/56 (37%), Positives = 37/56 (66%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
++HG DQ +RE + F+ +LI T + ARG+DV+++ V+N+D P++ E+Y
Sbjct: 805 SLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDY 860
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/62 (38%), Positives = 36/62 (58%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R + ++HG+ Q ER + F+ GS +L+ TD+ ARG+D+ V VINY P E
Sbjct: 389 RGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTE 448
Query: 183 NY 188
+Y
Sbjct: 449 DY 450
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 52.0 bits (119), Expect = 3e-07
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = +3
Query: 18 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 170
S +GDMDQ R++ + +FR + +LI TD+ ARGID+ + VIN+D P
Sbjct: 299 SVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFP 349
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 51.6 bits (118), Expect = 4e-07
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
V + +M QR R + +FR + +LI TDL+ARGID++ V +I+Y LP + E Y
Sbjct: 529 VCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKNVRTIIHYKLPHSAEVY 586
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +3
Query: 27 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 176
HG MDQ+ R+ + F SS VL+ TD+ ARG+D+ + V+ YD P +
Sbjct: 300 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIDYVVQYDPPQD 349
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/61 (37%), Positives = 30/61 (49%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
D VS +HG MDQ R F +L+ TD+ ARG+D+ V +I YD P
Sbjct: 358 DVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVDWIIQYDPPDKPTE 417
Query: 186 Y 188
Y
Sbjct: 418 Y 418
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
A+HG++ Q +REV + FR G L+ T++ ARG+D+ V +I + P E Y
Sbjct: 375 ALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDVQLIIQCEPPREVEAY 430
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/58 (39%), Positives = 33/58 (56%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
V +H Q R + +FR S +L+T+D+ ARG+D VS V+ LPS+RE Y
Sbjct: 365 VREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQY 422
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
AMH Q R + +F++G +L+ TD+ +RG+D+ V VINYD+P + +Y
Sbjct: 331 AMHSLNSQSMRLSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDY 386
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 48.4 bits (110), Expect = 4e-06
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 176
+ ++ +HGDM Q R+ + F SS L+ TD+ ARG+D+ + V+ YD P +
Sbjct: 301 KSISLIPIHGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQD 358
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 47.6 bits (108), Expect = 7e-06
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+ GDM+ R + + R G +L++TD+ ARGID+ + + + N+DLP +Y
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDY 425
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 47.6 bits (108), Expect = 7e-06
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+ GDM+ R + + R G +L++TD+ ARGID+ + + + N+DLP +Y
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDY 268
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 47.6 bits (108), Expect = 7e-06
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
V +H Q R + +FR + +L+T+D+ ARG+D VS V+ LPS+RE Y
Sbjct: 667 VREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSARGVDYPDVSLVVQMGLPSDREQY 724
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = +3
Query: 30 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 170
G ++Q R ++ FR G +VL+ +D L RG+DV+ V+ VINYD+P
Sbjct: 360 GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMP 406
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
++HG+ +ER +M F G VL++T +L RG+D+ V VI +D+PS + Y
Sbjct: 387 SIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEY 442
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
++HG+ +ER +M F G VL++T +L RG+D+ V VI +D+PS + Y
Sbjct: 250 SIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEY 305
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 185
+ V +H Q R + +FR +L+T+D+ ARG+D V+ V+ LP +RE
Sbjct: 336 NLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSARGVDYPDVTLVLQVGLPKDREQ 395
Query: 186 Y 188
Y
Sbjct: 396 Y 396
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
+HG++ Q +R + FR LI TD+ ARG+D+ V VINY P ++Y
Sbjct: 442 LHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSY 496
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 43.2 bits (97), Expect = 1e-04
Identities = 17/48 (35%), Positives = 32/48 (66%)
Frame = +3
Query: 45 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
R +E + F++ +LI T + ARG+DV+++ V+N+D P++ E+Y
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDY 698
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
V +H Q R + +F+ + +L+T+D+ ARG++ V+ VI +PS+RE Y
Sbjct: 661 VREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQY 718
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F + G +DQ +R QF + +L+ T++ ARG+D V ++ YD P N +Y
Sbjct: 425 FDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDY 484
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 42.3 bits (95), Expect = 2e-04
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
V +H Q R + +F+ + +L+T+D+ ARG++ V+ VI +PS+RE Y
Sbjct: 614 VREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQY 671
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 27 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 134
HG MDQ+ R+ + F SS VL+ TD+ ARG+D+
Sbjct: 273 HGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDI 308
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 6 DFTVSAMHG--DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 170
DF V G M +R E I+++F++ +L+ T + G+D+Q VI YDLP
Sbjct: 543 DFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLP 599
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +3
Query: 21 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGI 128
A+HGD Q ER+ ++ +F++G S ++ TD+ ARG+
Sbjct: 439 AIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGL 474
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQ-VSCVINYDLPSNRENY 188
+ ++HG M Q +R + QF S VL TD+LARG+D + V V+ D P + +Y
Sbjct: 345 LKSLHGKMSQEKRMGVYSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASY 402
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/54 (27%), Positives = 30/54 (55%)
Frame = +3
Query: 6 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 167
D ++ HG ++ E M +F G ++LI T+++ G+D+Q + +I D+
Sbjct: 506 DIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDV 559
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 38.3 bits (85), Expect = 0.004
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = +3
Query: 9 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 155
+ +HG M ++E + +FR+G +++L++T ++ G+DV S ++
Sbjct: 797 YNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 37.1 bits (82), Expect = 0.009
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +3
Query: 27 HGDMDQREREVIMRQFRT--GSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
HG++ +R +++F+ G L+ TDL ARG+D+ V V+ +D P N +Y
Sbjct: 401 HGEVPAEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDY 455
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 36.7 bits (81), Expect = 0.012
Identities = 14/62 (22%), Positives = 36/62 (58%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 182
R + ++ D+ + R ++++F+ RVL+T +LL G++ + +++ +LP++
Sbjct: 638 RGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELPTDAV 697
Query: 183 NY 188
+Y
Sbjct: 698 HY 699
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 35.5 bits (78), Expect = 0.028
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 3 RDFTVSAM--HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 176
RD ++A H + ++R I F + RV++ T G+D V VI++ +P +
Sbjct: 507 RDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGLDKGDVGAVIHFSVPGS 566
Query: 177 RENY 188
E Y
Sbjct: 567 MEEY 570
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 35.1 bits (77), Expect = 0.037
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +3
Query: 27 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 155
H + + +RE++ QFR G+ +VLI+T LA G+++ + +I
Sbjct: 811 HAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVII 853
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 34.3 bits (75), Expect = 0.065
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 42 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 164
Q+ ++ ++ +FR G V++ T + G+D+ +V VI +D
Sbjct: 513 QKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFD 553
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 33.9 bits (74), Expect = 0.086
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +3
Query: 3 RDFTVSAMHGDMDQREREVIMRQFRTG----SSRVLITTDLLARGIDVQQVSCVINYDLP 170
R V H + Q R M++F + +S L+ TD +RGID V V+ +D P
Sbjct: 663 RQLHVLPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFP 722
Query: 171 SNRENY 188
+ Y
Sbjct: 723 RDPSEY 728
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 33.5 bits (73), Expect = 0.11
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +3
Query: 48 EREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
ER I+ FR + V + TD ARG+DV VS VI D S+ ++
Sbjct: 462 ERANILADFRE-TGGVFVCTDAAARGVDVPNVSHVIQADFASSAVDF 507
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 32.3 bits (70), Expect = 0.26
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 72 FRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
F+ G +L TD++ G V SC++ +DLP +Y
Sbjct: 417 FQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 27 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 188
H + ++R + R+++TG R++ T GID V VI+ L E+Y
Sbjct: 459 HAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESY 512
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 31.9 bits (69), Expect = 0.35
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +3
Query: 33 DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 167
+M + + + +FR G +L+ T + G+D++Q + V+ +DL
Sbjct: 706 EMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDL 750
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 26.2 bits (55), Expect(2) = 0.66
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +3
Query: 84 SSRVLITTD----LLARGIDVQQVSCVINYDLPSNRENY 188
+S +++ TD LL+ G +INY+LP+ +E Y
Sbjct: 126 TSHLVVVTDVCLPLLSSGESSLSARVLINYELPTKKETY 164
Score = 23.4 bits (48), Expect(2) = 0.66
Identities = 7/22 (31%), Positives = 17/22 (77%)
Frame = +3
Query: 12 TVSAMHGDMDQREREVIMRQFR 77
+++A++ D+ RER +++ +FR
Sbjct: 76 SLAALYSDLADRERAMVIEKFR 97
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 134
V+ H + ERE++ +R G RVL T LA G+++
Sbjct: 296 VAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNL 335
>At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 210
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/39 (30%), Positives = 28/39 (71%)
Frame = +3
Query: 15 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 131
++AM +MD ++ +MR+F+ S+++ +TT++++ ID
Sbjct: 109 MAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 24 MHGDMDQREREVIMRQFR---TGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 176
MHG ++QR+R+ ++ F +GS +L +T + GI + S V+ D+ N
Sbjct: 978 MHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWN 1031
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 114 LARGIDVQQVSCVINYDLPSNRENY 188
+ RGID ++V VIN+D+P + Y
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGY 420
>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 772
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 418 AQWVDLLINIAIERRTQNINRKNVGALDEVGHITGHFNDTSVV-EVLNILQCSPVS 254
++W + + + R + RKN L VG TG F + ++ +++ILQ +S
Sbjct: 676 SRWASIRLGTNMPARAERTMRKNDSELQLVGEPTGEFYEVVMIFGIIDILQDYDIS 731
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 48 EREVIMRQFRTGSSRVLITTDLLARG 125
ER+ I R +R G R++ T L+A+G
Sbjct: 485 ERQAISRAYRIGQKRIVYTYHLVAKG 510
>At1g01770.1 68414.m00096 expressed protein
Length = 632
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -2
Query: 418 AQWVDLLINIAIERRTQNINRKNVGALDEVG 326
++W+ LL+ +A+ER T I N+GA+D G
Sbjct: 86 SEWMQLLLPLAVERGTCIIT--NMGAIDPSG 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,390
Number of Sequences: 28952
Number of extensions: 238593
Number of successful extensions: 563
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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