Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0487
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0241 - 6731004-6731078,6731200-6731409,6731503-6731632,673...    29   2.6  
04_01_0267 + 3584117-3584922,3585331-3585361                           28   8.0  

>03_02_0241 -
           6731004-6731078,6731200-6731409,6731503-6731632,
           6731719-6731889,6731991-6732113,6732238-6732342,
           6732483-6732490
          Length = 273

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 10  ELVDPRVVDPPGCRNSARV 66
           +LVDPR+ DPPG R   RV
Sbjct: 197 QLVDPRIEDPPGARALNRV 215


>04_01_0267 + 3584117-3584922,3585331-3585361
          Length = 278

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 614 FMVLTLPDQINIFFHNYIPFMVWLRILLKVYITVIGSVVNLIRDF 480
           F++L L    NI  ++     +WLR LL V + V+G+   L + F
Sbjct: 83  FLLLHLGGPDNITAYSLEDSKLWLRHLLTVVVQVLGAAYVLYKQF 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,456,499
Number of Sequences: 37544
Number of extensions: 338780
Number of successful extensions: 619
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)