Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0487
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    27   9.5  

>Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical
           protein T21H8.2 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 435 LSHSCQFFMEIFLYNNILVFSSHVEMYVKVIYRQIFLGRY 316
           L+ SC F   +FL++ +L   +H  + ++  Y    LG Y
Sbjct: 100 LTPSCSFIRRMFLFSIMLTTLTHASLTLERAYATYQLGAY 139


>AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical
           protein F52C6.8 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 346 HFNVHFYMARKHENIIIQKYLH 411
           HFNV +YMA  H+   +  YLH
Sbjct: 33  HFNVQWYMAVSHKKEDMAVYLH 54


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 346 HFNVHFYMARKHENIIIQKYLH 411
           HFNV +YMA  H+   +  YLH
Sbjct: 33  HFNVQWYMAVSHKKEDMAVYLH 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,095
Number of Sequences: 27780
Number of extensions: 350047
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)