Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0487
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.51 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    24   1.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.3  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +3

Query: 243 HFLSVWTRPLLMHY*YRICIIYTYNTYPRKS 335
           H ++ W R + +H   R+ ++  YNT  ++S
Sbjct: 335 HVMAPWVRRVFIHVLPRLLVMRRYNTPSKRS 365


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 411 MEIFLYNNILVFSSHVEMYVKVIY 340
           ++ F YNN  V+ + VE Y  +IY
Sbjct: 190 VQSFDYNNTWVYIADVEGYALIIY 213


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 566 YIPFMVWLRILLKVYITVIGS-VVNLIRDFFLITFTHNRHDSEDDCHILVSFLWRYFCII 390
           YI      R  L+ Y  ++ + +V  I    L+ F + + D +D   +L++F W+  C+I
Sbjct: 347 YIISRYVFRSALEDYCNIVATHLVCGILGSILVPFFYVQED-DDVKLVLLNFGWQMICLI 405

Query: 389 I 387
           +
Sbjct: 406 V 406


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 145 NYVITY*VKLTNFDSGIMLK*RIKKEHVRXRTDISYPCGPDHYLCIIN 288
           +YVI+  VK T+F    M+K  +K +H      IS     + Y+ I++
Sbjct: 425 SYVISGIVKCTDFVDKAMVKQYVKVKHSATLGYISRVLEKEPYVIILD 472


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = +2

Query: 314 QYLPKKICLYITLTYISTWLEN------TRILLYRNISIK 415
           +YLP  + + ITLTY+  ++        T I+++RN S++
Sbjct: 26  KYLPLTLIVPITLTYVVIFVTGFVGNIITCIVIWRNPSMQ 65


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 320 LPKKICLYITLTYISTWL 373
           +P K CL +TL  ++T L
Sbjct: 701 VPSKFCLSVTLLTVATSL 718


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,829
Number of Sequences: 438
Number of extensions: 4559
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)