Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0487
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putativ...    31   0.54 
At3g51140.1 68416.m05600 expressed protein                             29   3.8  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    27   8.8  

>At4g17895.1 68417.m02667 ubiquitin-specific protease 20, putative
           (UBP20) identical to ubiquitin-specific protease 20
           GI:11993480 [Arabidopsis thaliana]
          Length = 695

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 277 CIINIVFVLFTHTIPTQENLSVYHFNV 357
           C +N VF  FTHT+P  E+L  + + V
Sbjct: 185 CFLNSVFQCFTHTVPLIESLLSFRYEV 211


>At3g51140.1 68416.m05600 expressed protein
          Length = 278

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 245 FPIRVDPTITYAL-LISYLYYLHIQYLPKKI--CLYITLTYISTWLENTRILL 394
           FP    PT+   L LI+  Y++H Q L KK+   LY    +I +WL  T +++
Sbjct: 194 FPTEEGPTLQVLLSLIATFYFIH-QRLQKKLWTFLYGAGAFIFSWLVGTFLMV 245


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 65  WQSIFKLTFRQNVRSEIIFFFILYIYKTM 151
           W S FK T R+NV S+ +  F+  + KT+
Sbjct: 404 WSSEFKNTSRRNVESKQVASFLQLVLKTI 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,122
Number of Sequences: 28952
Number of extensions: 302710
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)