Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0486
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    74   2e-14
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   4.1  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      26   5.4  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   7.1  

>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 34/81 (41%), Positives = 52/81 (64%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
           RDA+M+PVR++ +ATHFK++        N     L+TPCSPGDP A E +W++V  + + 
Sbjct: 340 RDAIMEPVRRIHTATHFKEVYD------NKSNRTLVTPCSPGDPDAFESSWLEVNPEDIM 393

Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
           EP +T+ D   ++   KPT+N
Sbjct: 394 EPKLTVRDFYSAVRKVKPTLN 414


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 489 LTNNNKIVEIQLFLSFVFFLTITKQK 412
           LTN +K+ EIQL    VF + I K K
Sbjct: 69  LTNKSKVNEIQLISIEVFIIGICKHK 94


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 507 SVFIAILTNNNKIVEI-QLFLSFVFFLTITKQKQS 406
           SVF++I+ NN   + + QL LS V ++T      S
Sbjct: 309 SVFVSIMPNNGSKIRVQQLSLSLVEYITFIHPSSS 343


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 551 YVLLELVIINIKXKNQYL*QYLQIIIKSW 465
           +V+ +   +NI+ KN+Y  + +  ++K+W
Sbjct: 671 FVITQFSDVNIEVKNEYFEKLVGPVVKTW 699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,548
Number of Sequences: 5004
Number of extensions: 47361
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)