Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0486
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0450 + 3234378-3234834,3235118-3235223,3235722-3235920,323...    44   1e-04
01_01_0268 - 2214923-2215048,2215131-2215286,2215371-2215469,221...    44   1e-04
01_01_0270 - 2225250-2225263,2225549-2225732,2225817-2225972,222...    38   0.009
03_03_0012 + 13737898-13740031,13740347-13740486                       30   1.8  
03_01_0174 + 1410322-1410345,1410458-1410760,1411914-1412034,141...    28   5.6  
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579     28   7.4  
02_02_0545 - 11376016-11378307                                         27   9.7  

>02_01_0450 +
           3234378-3234834,3235118-3235223,3235722-3235920,
           3236119-3236187,3236299-3236373,3236484-3236582,
           3236694-3236864,3237394-3237519
          Length = 433

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
           +D L +PVRK Q A  F    G +  D +       TPC P  PGA+++T  ++ +  L 
Sbjct: 337 KDVLFEPVRKTQDAMFF---FGTAEGDGD---GGAWTPCGPTRPGAVQITMQELAAKGLA 390

Query: 191 ----EPPVTMSDMLRSLAVSKPTVN 253
                PP+T +D+ + LA  K TV+
Sbjct: 391 AQITPPPITRTDLDKVLARQKATVS 415


>01_01_0268 -
           2214923-2215048,2215131-2215286,2215371-2215469,
           2215557-2215631,2215732-2215800,2216515-2216713,
           2220162-2220267,2221117-2221588
          Length = 433

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSD--- 181
           +D L +PVRK Q A  F K  G           D+  PC P   GA++ T  ++ S    
Sbjct: 342 KDVLFEPVRKTQDAMFFFKADG-----------DMWMPCGPKQSGAVQTTMQELASKGLA 390

Query: 182 -KLGEPPVTMSDMLRSLAVSKPTVN 253
            K+  PP++ +D  + LA  +PTV+
Sbjct: 391 AKILPPPISRTDFEKVLARQRPTVS 415


>01_01_0270 -
           2225250-2225263,2225549-2225732,2225817-2225972,
           2226276-2226374,2226489-2226563,2226682-2226750,
           2226917-2227115,2227492-2227597,2228118-2228526
          Length = 436

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
           +DAL QPVRK Q A  F K             +D  TP     PG+I+ T  ++ S  L 
Sbjct: 321 KDALFQPVRKTQDAKFFIKAD-----------DDTWTPSEQSQPGSIQTTMQELASKGLA 369

Query: 191 E----PPVTMSDMLRSLAVSKPTVN 253
                PP++  D    L   +PTV+
Sbjct: 370 AKILLPPISKIDFDEVLVRQRPTVS 394


>03_03_0012 + 13737898-13740031,13740347-13740486
          Length = 757

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = -2

Query: 217 HV*HC---NWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISW 83
           H+ HC   NW    F   +I  G   S W+  R W  K ID +    W
Sbjct: 386 HLLHCWSSNWARVAFACDYIKKGKRLSRWMRLRRWILKRIDCDNSYLW 433


>03_01_0174 +
           1410322-1410345,1410458-1410760,1411914-1412034,
           1412147-1412321,1412417-1412487,1412586-1413268
          Length = 458

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = -3

Query: 156 ISIAPGSPGEHGVRRSLT-IT-LGSVGLG----PDIFLKCVADCTLRTGCISASRLVP 1
           ++ +P SP   G R+ +  IT  G VG G       F K VAD +LR G   A+ +VP
Sbjct: 23  VAASPSSPAGAGCRKHVARITEYGGVGDGRRSNTAAFAKAVADLSLRAGDGGAALVVP 80


>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
          Length = 824

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 162 QVISIAPGSPGEHGVRRSLTITLGSVGLGPDIFLKCVAD 46
           Q++ + P   G+    R+L  T+G+ G  PD F+ CV D
Sbjct: 713 QIVEVNPQGVGKGVAVRNLISTMGNRGSLPD-FILCVGD 750


>02_02_0545 - 11376016-11378307
          Length = 763

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 181 VTRHIDPGHFYSSWVTR--RTWRQKVIDN 101
           + RH  PGH    W++R  R W  +++ N
Sbjct: 481 IVRHASPGHAVKDWLSRATRRWLDRLMFN 509


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,039
Number of Sequences: 37544
Number of extensions: 266676
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)