Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0486
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28977| Best HMM Match : AAA (HMM E-Value=0)                        130   1e-30
SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4)                      31   0.81 
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
          Length = 442

 Score =  130 bits (313), Expect = 1e-30
 Identities = 58/81 (71%), Positives = 68/81 (83%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
           R+ALM PVRKVQ ATHFK++ GPSP +P+ I +DLLTPCSPGD GAIEM W+DVPSDKL 
Sbjct: 344 REALMMPVRKVQQATHFKRVRGPSPLNPDEIQDDLLTPCSPGDSGAIEMNWMDVPSDKLL 403

Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
           EP V+M DMLRSL  ++PTVN
Sbjct: 404 EPGVSMGDMLRSLVTTRPTVN 424


>SB_47374| Best HMM Match : RAMP (HMM E-Value=7.4)
          Length = 158

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +2

Query: 14  DALMQPVRKVQSATHFKKISG---PSPTDPNVIVNDLLTP 124
           DA+ +PVR++Q +TH+K+ +G   P P  P V+    + P
Sbjct: 36  DAVFEPVRELQRSTHWKQQAGKSAPVPLVPGVLCGIPVVP 75


>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1887

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/81 (25%), Positives = 38/81 (46%)
 Frame = +2

Query: 5    TSRDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDK 184
            TS  +++      ++AT  + ++ PSP+  +        P +  +  A++ T  + PS  
Sbjct: 1355 TSTYSIVTTTGSSKAATEHRPVAKPSPSRKHQTTT---WPQTTQEMAAVQQT-TEAPSTT 1410

Query: 185  LGEPPVTMSDMLRSLAVSKPT 247
               PP T+ D  R  A +KPT
Sbjct: 1411 A--PPTTVEDKTREEATTKPT 1429


>SB_1563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 71  SGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLGEPPVTMSDMLRSLAV 235
           SGP+PT+P +IV D     S G  G+IE    DV    +   P  +  + + + V
Sbjct: 65  SGPAPTNPVLIVRDGSINVSHG--GSIEKAKEDVDKLNVNLKPAVVDSVEKDVKV 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,823,971
Number of Sequences: 59808
Number of extensions: 331782
Number of successful extensions: 1347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)