Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0486
(647 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sortin... 144 3e-34
AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing... 144 3e-34
AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sortin... 144 3e-34
AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein. 144 3e-34
BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sortin... 140 3e-33
AL133634-1|CAB63758.1| 266|Homo sapiens hypothetical protein pr... 140 3e-33
AK000200-1|BAA91005.1| 240|Homo sapiens protein ( Homo sapiens ... 140 3e-33
AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sortin... 140 3e-33
AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sortin... 140 3e-33
AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein. 140 3e-33
AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protei... 140 3e-33
AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein. 140 3e-33
AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein. 140 3e-33
BC035121-1|AAH35121.1| 70|Homo sapiens VPS4A protein protein. 92 2e-18
BC060815-1|AAH60815.1| 1186|Homo sapiens AGTPBP1 protein protein. 31 3.5
AL451131-2|CAH72318.1| 1226|Homo sapiens ATP/GTP binding protein... 31 3.5
AL451131-1|CAH72317.1| 1186|Homo sapiens ATP/GTP binding protein... 31 3.5
AL157882-3|CAH71213.1| 1226|Homo sapiens ATP/GTP binding protein... 31 3.5
AL157882-2|CAH71214.1| 1186|Homo sapiens ATP/GTP binding protein... 31 3.5
AK023280-1|BAB14505.1| 806|Homo sapiens protein ( Homo sapiens ... 31 3.5
AK022562-1|BAB14100.1| 806|Homo sapiens protein ( Homo sapiens ... 31 3.5
AK001544-1|BAA91749.1| 1186|Homo sapiens protein ( Homo sapiens ... 31 3.5
AB028958-1|BAA82987.2| 1220|Homo sapiens KIAA1035 protein protein. 31 3.5
>BC039574-1|AAH39574.1| 444|Homo sapiens vacuolar protein sorting 4
homolog B (S. cerevisiae) protein.
Length = 444
Score = 144 bits (348), Expect = 3e-34
Identities = 66/81 (81%), Positives = 73/81 (90%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RDALMQPVRKVQSATHFKK+ GPS DPN +V+DLLTPCSPGDPGAIEMTW+DVP DKL
Sbjct: 346 RDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLL 405
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V+MSDMLRSL+ +KPTVN
Sbjct: 406 EPVVSMSDMLRSLSNTKPTVN 426
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 259 DMVKLRKFMEDFGQEG 306
D++KL+KF EDFGQEG
Sbjct: 429 DLLKLKKFTEDFGQEG 444
>AY232629-1|AAP59551.1| 444|Homo sapiens cell migration-inducing 1
protein.
Length = 444
Score = 144 bits (348), Expect = 3e-34
Identities = 66/81 (81%), Positives = 73/81 (90%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RDALMQPVRKVQSATHFKK+ GPS DPN +V+DLLTPCSPGDPGAIEMTW+DVP DKL
Sbjct: 346 RDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLL 405
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V+MSDMLRSL+ +KPTVN
Sbjct: 406 EPVVSMSDMLRSLSNTKPTVN 426
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 259 DMVKLRKFMEDFGQEG 306
D++KL+KF EDFGQEG
Sbjct: 429 DLLKLKKFTEDFGQEG 444
>AF282904-1|AAG01471.1| 444|Homo sapiens vacuolar protein sorting
factor 4B protein.
Length = 444
Score = 144 bits (348), Expect = 3e-34
Identities = 66/81 (81%), Positives = 73/81 (90%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RDALMQPVRKVQSATHFKK+ GPS DPN +V+DLLTPCSPGDPGAIEMTW+DVP DKL
Sbjct: 346 RDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLL 405
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V+MSDMLRSL+ +KPTVN
Sbjct: 406 EPVVSMSDMLRSLSNTKPTVN 426
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 259 DMVKLRKFMEDFGQEG 306
D++KL+KF EDFGQEG
Sbjct: 429 DLLKLKKFTEDFGQEG 444
>AF195514-1|AAG33022.1| 444|Homo sapiens VPS4-2 ATPase protein.
Length = 444
Score = 144 bits (348), Expect = 3e-34
Identities = 66/81 (81%), Positives = 73/81 (90%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RDALMQPVRKVQSATHFKK+ GPS DPN +V+DLLTPCSPGDPGAIEMTW+DVP DKL
Sbjct: 346 RDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLL 405
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V+MSDMLRSL+ +KPTVN
Sbjct: 406 EPVVSMSDMLRSLSNTKPTVN 426
Score = 31.9 bits (69), Expect = 2.0
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +1
Query: 259 DMVKLRKFMEDFGQEG 306
D++KL+KF EDFGQEG
Sbjct: 429 DLLKLKKFTEDFGQEG 444
>BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sorting 4
homolog A (S. cerevisiae) protein.
Length = 437
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 339 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 398
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 399 EPVVCMSDMLRSLATTRPTVN 419
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 421 DDLLKVKKFSEDFGQE 436
>AL133634-1|CAB63758.1| 266|Homo sapiens hypothetical protein
protein.
Length = 266
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 168 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 227
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 228 EPVVCMSDMLRSLATTRPTVN 248
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 250 DDLLKVKKFSEDFGQE 265
>AK000200-1|BAA91005.1| 240|Homo sapiens protein ( Homo sapiens
cDNA FLJ20193 fis, clone COLF0795. ).
Length = 240
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 142 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 201
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 202 EPVVCMSDMLRSLATTRPTVN 222
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 224 DDLLKVKKFSEDFGQE 239
>AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sorting
factor 4A protein.
Length = 437
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 339 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 398
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 399 EPVVCMSDMLRSLATTRPTVN 419
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 421 DDLLKVKKFSEDFGQE 436
>AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sorting
VPS4-1 protein.
Length = 437
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 339 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 398
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 399 EPVVCMSDMLRSLATTRPTVN 419
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 421 DDLLKVKKFSEDFGQE 436
>AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein.
Length = 437
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 339 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 398
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 399 EPVVCMSDMLRSLATTRPTVN 419
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 421 DDLLKVKKFSEDFGQE 436
>AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protein 4
protein.
Length = 432
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 334 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 393
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 394 EPVVCMSDMLRSLATTRPTVN 414
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 416 DDLLKVKKFSEDFGQE 431
>AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein.
Length = 437
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 339 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 398
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 399 EPVVCMSDMLRSLATTRPTVN 419
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 421 DDLLKVKKFSEDFGQE 436
>AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein.
Length = 437
Score = 140 bits (340), Expect = 3e-33
Identities = 62/81 (76%), Positives = 74/81 (91%)
Frame = +2
Query: 11 RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
RD+LMQPVRKVQSATHFKK+ GPS T+P+++++DLLTPCSPGDPGA+EMTW+DVP DKL
Sbjct: 339 RDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLL 398
Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
EP V MSDMLRSLA ++PTVN
Sbjct: 399 EPVVCMSDMLRSLATTRPTVN 419
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 421 DDLLKVKKFSEDFGQE 436
>BC035121-1|AAH35121.1| 70|Homo sapiens VPS4A protein protein.
Length = 70
Score = 91.9 bits (218), Expect = 2e-18
Identities = 39/52 (75%), Positives = 47/52 (90%)
Frame = +2
Query: 98 VIVNDLLTPCSPGDPGAIEMTWIDVPSDKLGEPPVTMSDMLRSLAVSKPTVN 253
++++DLLTPCSPGDPGA+EMTW+DVP DKL EP V MSDMLRSLA ++PTVN
Sbjct: 1 MMIDDLLTPCSPGDPGAVEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVN 52
Score = 30.7 bits (66), Expect = 4.7
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 256 DDMVKLRKFMEDFGQE 303
DD++K++KF EDFGQE
Sbjct: 54 DDLLKVKKFSEDFGQE 69
>BC060815-1|AAH60815.1| 1186|Homo sapiens AGTPBP1 protein protein.
Length = 1186
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 862 EHICHFRNRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 915
>AL451131-2|CAH72318.1| 1226|Homo sapiens ATP/GTP binding protein 1
protein.
Length = 1226
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 902 EHICHFRNRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 955
>AL451131-1|CAH72317.1| 1186|Homo sapiens ATP/GTP binding protein 1
protein.
Length = 1186
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 862 EHICHFRNRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 915
>AL157882-3|CAH71213.1| 1226|Homo sapiens ATP/GTP binding protein 1
protein.
Length = 1226
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 902 EHICHFRNRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 955
>AL157882-2|CAH71214.1| 1186|Homo sapiens ATP/GTP binding protein 1
protein.
Length = 1186
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 862 EHICHFRNRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 915
>AK023280-1|BAB14505.1| 806|Homo sapiens protein ( Homo sapiens
cDNA FLJ13218 fis, clone NT2RP4001841. ).
Length = 806
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 482 EHICHFRDRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 535
>AK022562-1|BAB14100.1| 806|Homo sapiens protein ( Homo sapiens
cDNA FLJ12500 fis, clone NT2RM2001675. ).
Length = 806
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 482 EHICHFRNRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 535
>AK001544-1|BAA91749.1| 1186|Homo sapiens protein ( Homo sapiens cDNA
FLJ10682 fis, clone NT2RP3000072. ).
Length = 1186
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 862 EHICHFRNRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 915
>AB028958-1|BAA82987.2| 1220|Homo sapiens KIAA1035 protein protein.
Length = 1220
Score = 31.1 bits (67), Expect = 3.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 220 QHV*HCNWRLAKFVTRHIDPGHFYSSWVTRRTWRQKVIDNNIRISWARTRYFFKV 56
+H+ H R F++ + PG +SWV + T + ++ NN R Y FK+
Sbjct: 896 EHICHFRNRPYVFLSARVHPGETNASWVMKGT-LEYLMSNNPTAQSLRESYIFKI 949
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,598,088
Number of Sequences: 237096
Number of extensions: 1587102
Number of successful extensions: 2869
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2869
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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