Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0486
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF145606-1|AAD38581.1|  442|Drosophila melanogaster BcDNA.GH0267...   139   3e-33
AE014298-2640|AAF48783.1|  442|Drosophila melanogaster CG6842-PA...   139   3e-33
AF145678-1|AAD38653.1|  641|Drosophila melanogaster BcDNA.LD2267...    32   0.77 
AE013599-90|AAF57325.2|  683|Drosophila melanogaster CG1344-PA p...    32   0.77 
AF209858-1|AAG43498.1|  321|Drosophila melanogaster LD14 protein.      29   7.2  
AE014298-1281|AAF46447.2|  321|Drosophila melanogaster CG12664-P...    29   7.2  
AB065095-1|BAB83666.1|  321|Drosophila melanogaster transmembran...    29   7.2  
U38238-1|AAA97864.1| 1113|Drosophila melanogaster HLH106 protein.      28   9.5  

>AF145606-1|AAD38581.1|  442|Drosophila melanogaster BcDNA.GH02678
           protein.
          Length = 442

 Score =  139 bits (337), Expect = 3e-33
 Identities = 62/81 (76%), Positives = 72/81 (88%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
           RDALM+PVRKVQ+ATHFK++SGPSPT+   IVNDLL PCSPGD GA+EM W+DVPSDKL 
Sbjct: 344 RDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLF 403

Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
           EPPVTM DML+SL+ +KPTVN
Sbjct: 404 EPPVTMRDMLKSLSRTKPTVN 424



 Score = 34.3 bits (75), Expect = 0.14
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 256 DDMVKLRKFMEDFGQEG 306
           DD+ KLRKF EDFGQEG
Sbjct: 426 DDLKKLRKFTEDFGQEG 442


>AE014298-2640|AAF48783.1|  442|Drosophila melanogaster CG6842-PA
           protein.
          Length = 442

 Score =  139 bits (337), Expect = 3e-33
 Identities = 62/81 (76%), Positives = 72/81 (88%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
           RDALM+PVRKVQ+ATHFK++SGPSPT+   IVNDLL PCSPGD GA+EM W+DVPSDKL 
Sbjct: 344 RDALMEPVRKVQTATHFKRVSGPSPTNHEEIVNDLLVPCSPGDQGAVEMNWMDVPSDKLF 403

Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
           EPPVTM DML+SL+ +KPTVN
Sbjct: 404 EPPVTMRDMLKSLSRTKPTVN 424



 Score = 34.3 bits (75), Expect = 0.14
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 256 DDMVKLRKFMEDFGQEG 306
           DD+ KLRKF EDFGQEG
Sbjct: 426 DDLKKLRKFTEDFGQEG 442


>AF145678-1|AAD38653.1|  641|Drosophila melanogaster BcDNA.LD22679
           protein.
          Length = 641

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 30  LYVKYNLPHTLKKYLVRAQLILMLLSMTF*RHVRLVTQE 146
           +YV+Y +PH LK + +R   I ++L   F  +VRL++ E
Sbjct: 292 IYVQYLMPHILKMFRLRDAQIRLILLDYFMDYVRLLSDE 330


>AE013599-90|AAF57325.2|  683|Drosophila melanogaster CG1344-PA
           protein.
          Length = 683

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 30  LYVKYNLPHTLKKYLVRAQLILMLLSMTF*RHVRLVTQE 146
           +YV+Y +PH LK + +R   I ++L   F  +VRL++ E
Sbjct: 334 IYVQYLMPHILKMFRLRDAQIRLILLDYFMDYVRLLSDE 372


>AF209858-1|AAG43498.1|  321|Drosophila melanogaster LD14 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPG 136
           R  L QPV    +  H + I  P PTD   I++ L TP   G
Sbjct: 219 RQHLEQPVDHTDALEHSQHIRIPRPTDRVYIISALPTPSELG 260


>AE014298-1281|AAF46447.2|  321|Drosophila melanogaster CG12664-PB
           protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPG 136
           R  L QPV    +  H + I  P PTD   I++ L TP   G
Sbjct: 219 RQHLEQPVDHTDALEHSQHIRIPRPTDRVYIISALPTPSELG 260


>AB065095-1|BAB83666.1|  321|Drosophila melanogaster transmembrane
           protein FEND protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPG 136
           R  L QPV    +  H + I  P PTD   I++ L TP   G
Sbjct: 219 RQHLEQPVDHTDALEHSQHIRIPRPTDRVYIISALPTPSELG 260


>U38238-1|AAA97864.1| 1113|Drosophila melanogaster HLH106 protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 154 FYSSWVTRRTWRQKVIDNNIRISWARTRYFFKVCGRLYFTYRL 26
           +Y S   +   R +  +    + WA T Y ++ C    FTY L
Sbjct: 696 YYMSRARQECGRTRATEQTQELRWAFTAYGYRYCATHVFTYDL 738


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,562,831
Number of Sequences: 53049
Number of extensions: 478552
Number of successful extensions: 1020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)