Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0486
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to ye...   136   2e-32
U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC024776-23|AAK68459.2|  368|Caenorhabditis elegans Hypothetical...    27   8.7  

>AC024756-9|AAK29883.4|  430|Caenorhabditis elegans Related to yeast
           vacuolar proteinsorting factor protein 4 protein.
          Length = 430

 Score =  136 bits (328), Expect = 2e-32
 Identities = 60/81 (74%), Positives = 68/81 (83%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
           +DALMQPVR+VQSATHFK +SGPSP DPNVI +DLLTPCSPGDP AI M W+DVP DKL 
Sbjct: 330 KDALMQPVRRVQSATHFKHVSGPSPKDPNVIAHDLLTPCSPGDPHAIAMNWLDVPGDKLA 389

Query: 191 EPPVTMSDMLRSLAVSKPTVN 253
            PP++M D+ RSLA  KPTVN
Sbjct: 390 NPPLSMQDISRSLASVKPTVN 410


>U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical
           protein F56A3.1 protein.
          Length = 783

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +1

Query: 181 QTWRAASYNVRHVEIFSCFEAYCK--CDDMVK 270
           +TW++   + +H EI   FE YC+   DD+ +
Sbjct: 328 KTWKSEDNSAKHAEITGKFEKYCEKTIDDLAR 359


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 71  SGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLGEPPVTMSD 214
           S P P DP+    D  +P  P  PG ++ +    PS+     PV  SD
Sbjct: 193 SSPGPVDPS----DEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSD 236


>AC024845-2|AAF60851.1|  324|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.4 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 5   TSRDALMQPVRKVQSATHFK-KISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPS 178
           T+     +P+RK Q+A  F+ K S    +D   + N+L +P SP     I      +PS
Sbjct: 229 TNNSPFRRPIRK-QTALRFQGKASVNLFSDLTAVTNELGSPSSPSSNCVISTATTSIPS 286


>AC024776-23|AAK68459.2|  368|Caenorhabditis elegans Hypothetical
           protein Y41D4B.1 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 507 SVFIAILTNNNKIVEIQLFLSFVF 436
           SVF  +L   NK +EIQL+  +VF
Sbjct: 200 SVFFKLLEMKNKAMEIQLYNDYVF 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,634,201
Number of Sequences: 27780
Number of extensions: 271353
Number of successful extensions: 633
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)