Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0486
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.63 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 134 GDPGAIEMTWIDVPSDKLGEPPVTMSDMLRSLAVSKPTVN 253
           G P   E T+I  P ++    P+T  D+ R    + PT N
Sbjct: 658 GSPTPAESTFI--PEERRIYSPITFQDVARRSVANSPTKN 695


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 322 FNDKLRLNNYNYTKYEYVK 378
           +N+K   NN NY K  Y K
Sbjct: 100 YNNKYNYNNNNYNKKLYYK 118



 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = +1

Query: 325 NDKLRLNN-YNYTKYEYVKKL 384
           N K   NN YNY    Y KKL
Sbjct: 95  NYKYNYNNKYNYNNNNYNKKL 115


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 78  GPDIFLKCVA 49
           GP +FLKCVA
Sbjct: 408 GPSMFLKCVA 417


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 325 NDKLRLNNYNYTKYEYVKKL 384
           N K   NN NY    Y KKL
Sbjct: 93  NYKYNYNNNNYNNNNYNKKL 112


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 325 NDKLRLNNYNYTKYEYVKKL 384
           N K   NN NY    Y KKL
Sbjct: 93  NYKYNYNNNNYNNNNYNKKL 112


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 286 P*ISSILPYHHIYSRL 239
           P +  ILP HH+ SR+
Sbjct: 156 PPVYEILPQHHLDSRV 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,033
Number of Sequences: 438
Number of extensions: 3159
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)