Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0486
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol...    46   2e-05
At5g52180.1 68418.m06477 expressed protein                             30   1.5  
At3g46210.1 68416.m05002 3' exoribonuclease family domain 1-cont...    28   6.1  

>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
           sorting protein-related similar to SP|P46467 SKD1
           protein (Vacuolar sorting protein 4b) {Mus musculus};
           contains Pfam profiles PF00004: ATPase AAA family,
           PF04212: MIT domain
          Length = 435

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = +2

Query: 11  RDALMQPVRKVQSATHFKKISGPSPTDPNVIVNDLLTPCSPGDPGAIEMTWIDVPSDKLG 190
           +D L +PVRK Q A  F K    SP       +    PC P  PGAI+ T  D+ +  L 
Sbjct: 344 KDVLFEPVRKTQDAMFFFK----SP-------DGTWMPCGPRHPGAIQTTMQDLATKGLA 392

Query: 191 E----PPVTMSDMLRSLAVSKPTVN 253
           E    PP+T +D  + LA  +PTV+
Sbjct: 393 EKIIPPPITRTDFEKVLARQRPTVS 417


>At5g52180.1 68418.m06477 expressed protein
          Length = 458

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 162 QVISIAPGSPGEHGVRRSLTITLGSVGLGPDIFLKCVADCTLRTGCISASRLVP 1
           +V+    G PG  G  +S +  +G+VG+  D F K    C L +G + A  + P
Sbjct: 288 EVLVKRSGDPGTSGSSQSQSGLVGNVGMLSDDFAKFRVLCLLLSGLLQAMAVRP 341


>At3g46210.1 68416.m05002 3' exoribonuclease family domain
           1-containing protein similar to SP|Q9NQT4 Exosome
           complex exonuclease RRP46 (EC 3.1.13.-) (Ribosomal RNA
           processing protein 46) {Homo sapiens}; contains Pfam
           profile PF01138: 3' exoribonuclease family, domain 1
          Length = 239

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = -3

Query: 153 SIAPGSPGEHGVRRSLTITLGSVGLGPDIFLKCVADCTLRTGCISA 16
           S+A G P EHG+  S+T  + SV    D FL CV +    T  +SA
Sbjct: 184 SVAEGEPVEHGIITSITHGVMSV---DDYFL-CVENGRAATASLSA 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,449,628
Number of Sequences: 28952
Number of extensions: 229331
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)