Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0485
         (628 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55750 Cluster: PREDICTED: similar to CG11791-PA...    88   1e-16
UniRef50_UPI0000DB736A Cluster: PREDICTED: similar to CG11791-PA...    76   6e-13
UniRef50_Q5TTR8 Cluster: ENSANGP00000026493; n=3; Culicidae|Rep:...    60   4e-08
UniRef50_Q929Q4 Cluster: Lin2220 protein; n=13; Listeria|Rep: Li...    33   5.6  

>UniRef50_UPI0000D55750 Cluster: PREDICTED: similar to CG11791-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG11791-PA, isoform A - Tribolium castaneum
          Length = 137

 Score = 88.2 bits (209), Expect = 1e-16
 Identities = 41/61 (67%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = +1

Query: 61  VYPHDQDNLMQPXGNERASF-RSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLKQIYV 237
           +Y +DQD L+Q    ER  F R  RKN+GGRW+RLVK+KP  EVYTIP ELKPQLKQIYV
Sbjct: 77  MYNNDQDTLVQNLPTERPGFVRGFRKNLGGRWRRLVKRKPPTEVYTIPAELKPQLKQIYV 136

Query: 238 Y 240
           Y
Sbjct: 137 Y 137


>UniRef50_UPI0000DB736A Cluster: PREDICTED: similar to CG11791-PA,
           isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG11791-PA, isoform A - Apis mellifera
          Length = 160

 Score = 76.2 bits (179), Expect = 6e-13
 Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
 Frame = +1

Query: 70  HDQDNLMQPXGNERASF-RSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLKQIYVY 240
           +DQD L+    ++R  F +  RKNIGGRW+RLVK+KPE E   IPPELK QLK IYVY
Sbjct: 103 NDQDTLVHALPSDRPGFAKGFRKNIGGRWRRLVKRKPESETCAIPPELKDQLKTIYVY 160


>UniRef50_Q5TTR8 Cluster: ENSANGP00000026493; n=3; Culicidae|Rep:
           ENSANGP00000026493 - Anopheles gambiae str. PEST
          Length = 74

 Score = 60.1 bits (139), Expect = 4e-08
 Identities = 25/46 (54%), Positives = 33/46 (71%)
 Frame = +1

Query: 103 NERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLKQIYVY 240
           NE+  F+ L++ + GR+KRLV +K  +    IPPELKPQLK IYVY
Sbjct: 29  NEKTGFKGLKRQLSGRFKRLVSRKAHEPAPVIPPELKPQLKTIYVY 74


>UniRef50_Q929Q4 Cluster: Lin2220 protein; n=13; Listeria|Rep:
           Lin2220 protein - Listeria innocua
          Length = 646

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 389 LHGSAAILSLDISFRPIISNDQFTKTFFIYYFYVISSLRNVL 514
           L G + +L+LD++   +IS   +T  + +YYF  ++S  N++
Sbjct: 601 LIGLSHMLALDLTLPVVISTGVYTLMYIVYYFVTLNSYTNIV 642


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,352,864
Number of Sequences: 1657284
Number of extensions: 8919466
Number of successful extensions: 20393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20390
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46051731393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)