Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0485
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    29   0.42 
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   5.1  
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   6.8  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 193 CKLPVQASFSLVVSNDHRYSCEDCG 119
           C++ +   FS+ + N HRY C  CG
Sbjct: 259 CRMYINP-FSIFIDNGHRYRCNSCG 282


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 200 GIV*TSCSGFFFTSRFQR 147
           G++ TS  GFFF  RF+R
Sbjct: 15  GLITTSIGGFFFLRRFRR 32


>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 231

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 121 RSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQLK 225
           R  RKN    W  L  K    E    PPEL P+LK
Sbjct: 150 RKKRKNSPDPWANLQTKPSFGETVQAPPEL-PELK 183


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 419 DISFRPIISNDQFTKTFF 472
           D+S  PI SND+  + FF
Sbjct: 372 DLSHHPIFSNDEVVRVFF 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,383
Number of Sequences: 5004
Number of extensions: 40030
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)