Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0485
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0123 + 25817172-25817470,25818983-25819133,25819217-258193...    29   4.0  
01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041...    28   5.3  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    27   9.2  
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897...    27   9.2  
03_01_0540 - 4055635-4055743,4055829-4055981,4056037-4056104,405...    27   9.2  

>05_06_0123 +
           25817172-25817470,25818983-25819133,25819217-25819399,
           25819740-25819814,25819985-25820140,25820275-25820373,
           25820457-25820587,25821077-25821158,25821251-25821598
          Length = 507

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/32 (43%), Positives = 23/32 (71%)
 Frame = +1

Query: 115 SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 210
           +FR LR  +GG+ KR+V+++ E+   +IPP L
Sbjct: 115 NFRVLRVQLGGKEKRVVQQQYEE--VSIPPHL 144


>01_06_0665 -
           31003333-31003680,31003773-31003854,31004068-31004198,
           31004272-31004370,31004511-31004666,31004877-31004951,
           31005554-31005736,31005833-31005983,31006732-31007027
          Length = 506

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 115 SFRSLRKNIGGRWKRLVKKKPEQEVYTIPPEL 210
           +FR +R  +GGR KR+V ++ E+    IPP L
Sbjct: 114 NFRVIRVQLGGREKRVVSQQYEE--VAIPPHL 143


>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
            16570316-16571924,16572363-16573781
          Length = 1640

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 79   DNLMQPXGNERASFRSLRKNIG---GRWKRLVKKKPEQEVYTIPPELKPQ 219
            D L  P    R +F+S  + +     RW+ L + +PEQE     PEL P+
Sbjct: 1508 DMLGVPGNKTREAFKSKSELLAYEVRRWQALRRPQPEQEARGWLPELFPE 1557


>03_05_0172 -
           21488504-21488752,21488862-21489611,21489691-21489789,
           21489862-21490776,21490847-21490976,21491438-21491583,
           21491801-21491896,21492521-21492613,21492702-21492755,
           21492897-21492956,21493046-21493171,21493283-21493366,
           21493444-21493587,21493667-21493963
          Length = 1080

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 468 KVLVNWSLEIIGRKDMSKDKMAAEPCRCYIKFLYIH 361
           +V  N   +I GR++ S +K  +  CRC   FL +H
Sbjct: 206 RVFQNLFAQIQGRQESSPEKQTSYQCRC--SFLEVH 239


>03_01_0540 -
           4055635-4055743,4055829-4055981,4056037-4056104,
           4056486-4056580,4057180-4057241,4057371-4057410,
           4058124-4059141,4059231-4059611,4059873-4059880,
           4061005-4061067,4061416-4061719
          Length = 766

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 261 VFSMLVLKQETSKALVLSVDVNQNSMVVTNSYQHECKEI*CNIC 392
           V+ M  + +E   A ++SVD+ QN++        E   + C+ C
Sbjct: 535 VYMMSTMTEEDKNAWIISVDMKQNTLQAVAPISAERFSVLCSDC 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,638,635
Number of Sequences: 37544
Number of extensions: 240696
Number of successful extensions: 518
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)