Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0485
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046) 29 2.3
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_57402| Best HMM Match : DEAD (HMM E-Value=0.42) 27 9.4
SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9) 27 9.4
SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2) 27 9.4
SB_48939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_43554| Best HMM Match : LIM (HMM E-Value=0.91) 27 9.4
SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_27946| Best HMM Match : DEAD (HMM E-Value=0.42) 27 9.4
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_21910| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_9872| Best HMM Match : ResIII (HMM E-Value=0.36) 27 9.4
SB_5900| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_366| Best HMM Match : ResIII (HMM E-Value=0.28) 27 9.4
SB_59747| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_56794| Best HMM Match : ResIII (HMM E-Value=0.63) 27 9.4
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_53226| Best HMM Match : ResIII (HMM E-Value=0.45) 27 9.4
SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19) 27 9.4
SB_48295| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_46041| Best HMM Match : LIM (HMM E-Value=1.5) 27 9.4
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 27 9.4
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 27 9.4
SB_27423| Best HMM Match : ResIII (HMM E-Value=0.56) 27 9.4
SB_27311| Best HMM Match : DEAD (HMM E-Value=0.17) 27 9.4
SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24) 27 9.4
SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55) 27 9.4
SB_2121| Best HMM Match : ResIII (HMM E-Value=0.46) 27 9.4
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -1
Query: 199 GSCKLPVQASFSLVVSNDHRYSCEDCGNW-HARC 101
G K P A SN C++CG W HA+C
Sbjct: 205 GPVKYPCSACTKPTKSNQRAICCDECGQWTHAKC 238
>SB_33603| Best HMM Match : PHD (HMM E-Value=0.00046)
Length = 396
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 199 GSCKLPVQASFSLVVSNDHRYSCEDCGNW-HARC 101
G K P A SN C++CG+W HA+C
Sbjct: 97 GPVKHPCGACGKPTKSNQKAICCDECGHWMHAKC 130
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -1
Query: 199 GSCKLPVQASFSLVVSNDHRYSCEDCGNW-HARC 101
G K P A SN C++CG+W HA+C
Sbjct: 97 GPVKHPCGACGKPTKSNQKAICCDECGHWMHAKC 130
>SB_3753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+RY CEDCG ++ C
Sbjct: 704 SDYRYLCEDCGKPYSTC 720
>SB_57402| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 428
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 338 SDYRCLCEDCGNPYSTC 354
>SB_54543| Best HMM Match : ResIII (HMM E-Value=1.9)
Length = 521
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 273 SDYRCLCEDCGNPYSTC 289
>SB_50794| Best HMM Match : Cys_knot (HMM E-Value=2.2)
Length = 396
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 134 SDYRCLCEDCGNPYSTC 150
>SB_48939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 590 SDYRCLCEDCGNPYSTC 606
>SB_43554| Best HMM Match : LIM (HMM E-Value=0.91)
Length = 334
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 15 SDYRCLCEDCGNPYSTC 31
>SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1213
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 895 SDYRCLCEDCGNPYSTC 911
>SB_27946| Best HMM Match : DEAD (HMM E-Value=0.42)
Length = 751
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 433 SDYRCLCEDCGNPYSTC 449
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 163 VKKKPEQEVYTIPPELKPQLKQ 228
+K QE +TIPPELKP L Q
Sbjct: 1310 IKPNVHQE-FTIPPELKPPLPQ 1330
>SB_21910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 226
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 15 SDYRCLCEDCGNPYSTC 31
>SB_9872| Best HMM Match : ResIII (HMM E-Value=0.36)
Length = 624
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 338 SDYRCLCEDCGNPYSTC 354
>SB_5900| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 842 SDYRCLCEDCGNPYSTC 858
>SB_366| Best HMM Match : ResIII (HMM E-Value=0.28)
Length = 1104
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCG ++RC
Sbjct: 927 SDYRCLCEDCGKPYSRC 943
>SB_59747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1064
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 931 SDYRCLCEDCGNPYSTC 947
>SB_56794| Best HMM Match : ResIII (HMM E-Value=0.63)
Length = 532
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 226 SDYRCLCEDCGNPYSTC 242
>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Frame = -1
Query: 199 GSCKLPVQASFSLVVSNDHRYSCEDCGNW-HARC 101
G CK P V SN CE C W H +C
Sbjct: 12 GPCKFPCGVCAKPVKSNQAGIECEQCLLWYHKKC 45
>SB_53226| Best HMM Match : ResIII (HMM E-Value=0.45)
Length = 880
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 797 SDYRCLCEDCGNPYSTC 813
>SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19)
Length = 1390
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 1072 SDYRCLCEDCGNPYSTC 1088
>SB_48295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1269
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 951 SDYRRLCEDCGNPYSTC 967
>SB_46041| Best HMM Match : LIM (HMM E-Value=1.5)
Length = 1236
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 918 SDYRRLCEDCGNPYSTC 934
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 876 SDYRCLCEDCGNPYSTC 892
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 871 SDYRCLCEDCGNPYSTC 887
>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
Length = 992
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 784 SDYRCLCEDCGNPYSTC 800
>SB_27423| Best HMM Match : ResIII (HMM E-Value=0.56)
Length = 562
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 436 SDYRCLCEDCGNPYSTC 452
>SB_27311| Best HMM Match : DEAD (HMM E-Value=0.17)
Length = 1178
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 858 SDYRCLCEDCGNPYSTC 874
>SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24)
Length = 1179
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 873 SDYRCLCEDCGNPYSTC 889
>SB_13172| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 599
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCG ++RC
Sbjct: 422 SDYRCLCEDCGKPYSRC 438
>SB_5505| Best HMM Match : ResIII (HMM E-Value=0.55)
Length = 1346
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 1027 SDYRCLCEDCGNPYSTC 1043
>SB_2121| Best HMM Match : ResIII (HMM E-Value=0.46)
Length = 1106
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 151 NDHRYSCEDCGNWHARC 101
+D+R CEDCGN ++ C
Sbjct: 895 SDYRCLCEDCGNPYSTC 911
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,036,530
Number of Sequences: 59808
Number of extensions: 288633
Number of successful extensions: 930
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -