Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0485
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z92830-11|CAB07351.1|  165|Caenorhabditis elegans Hypothetical p...    28   6.3  
AF003142-10|AAK73885.1|  338|Caenorhabditis elegans Hypothetical...    27   8.3  
AF003142-9|AAB54184.1|  348|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical
           protein B0024.6 protein.
          Length = 1161

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 270 MLVLKQETSKALVLSVDVNQNSMVVTNSYQHE 365
           +L L    + +L+++VDV+Q   VVT  Y +E
Sbjct: 474 VLTLDSNNNSSLIMTVDVDQQEAVVTKHYTNE 505


>Z92830-11|CAB07351.1|  165|Caenorhabditis elegans Hypothetical
           protein F11A5.13 protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 401 AAILSLDISFRPIISNDQFTKTFFIYYFYVISSL 502
           A++L + + F  I+  D+F KTF  Y+  +++ L
Sbjct: 20  ASLLLIILGFINILDKDEFDKTFVPYWMIILACL 53


>AF003142-10|AAK73885.1|  338|Caenorhabditis elegans Hypothetical
           protein F57C9.1b protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 243 DALKRIVFSMLVLKQETSKALVLSVDVNQNSM 338
           +A+KR++ SM  L ++TS    L VD N  +M
Sbjct: 279 EAVKRVLASMQCLIRKTSSYAQLQVDTNSRAM 310


>AF003142-9|AAB54184.1|  348|Caenorhabditis elegans Hypothetical
           protein F57C9.1a protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 243 DALKRIVFSMLVLKQETSKALVLSVDVNQNSM 338
           +A+KR++ SM  L ++TS    L VD N  +M
Sbjct: 289 EAVKRVLASMQCLIRKTSSYAQLQVDTNSRAM 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,703
Number of Sequences: 27780
Number of extensions: 223476
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)