Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0485
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 324 NQNSMVVTNSYQHECKEI*CNICTARQ 404
           N N+    N+Y + CK++  NI    Q
Sbjct: 337 NYNNNNYNNNYNNNCKKLYYNIINIEQ 363


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 558 SRNLNVVWQHE 590
           SR++NV WQH+
Sbjct: 921 SRSINVKWQHK 931


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 558 SRNLNVVWQHE 590
           SR++NV WQH+
Sbjct: 917 SRSINVKWQHK 927


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 479 YFYVISSLRNVLLLSIRTLMIVSV 550
           +++V  SL+NVLL   +    +SV
Sbjct: 103 FYFVHESLKNVLLWDFQECTFISV 126


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +3

Query: 276 VLKQETSKALVLSVDVNQNSMVVTNSYQHEC 368
           V ++  S   +L   VN+ +  +  +Y +EC
Sbjct: 457 VSRESNSNQFILMTTVNEGNNNMAATYMNEC 487


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 267 SMLVLKQETSKALVLSVDVNQNS 335
           S+ V KQ+    L  S +VN NS
Sbjct: 520 SLAVAKQQNQVPLTSSSNVNNNS 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,287
Number of Sequences: 438
Number of extensions: 2805
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)