Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0485
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52620.1 68418.m06533 F-box family protein contains Pfam prof...    30   1.4  
At3g54900.1 68416.m06084 CAX-interacting protein 1 (CAXIP1) iden...    28   5.8  
At2g34270.1 68415.m04193 hypothetical protein  and genscan             28   5.8  
At1g19990.1 68414.m02504 expressed protein ; expression supporte...    28   5.8  

>At5g52620.1 68418.m06533 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 375

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 389 LHGSAAILSLDISFRPIISNDQFTKTFFIYYF 484
           +HG+ +++ +  +   I+S D  +++FF+YYF
Sbjct: 305 VHGNVSVVGVTATGEIILSMDYTSESFFVYYF 336


>At3g54900.1 68416.m06084 CAX-interacting protein 1 (CAXIP1)
           identical to cDNA CAXIP1 protein (CAXIP1) GI:27752304,
           CAXIP1 protein [Arabidopsis thaliana] GI:27752305
          Length = 173

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = -2

Query: 330 FG*RQRLRPAPLKSPASVLTY*IRFVLERLINVYLLKLWLELRRD 196
           +G   +L+P   +  AS LT  ++  LE+L+N   + L+++  RD
Sbjct: 49  YGSNLKLKPTKFRCSASALTPQLKDTLEKLVNSEKVVLFMKGTRD 93


>At2g34270.1 68415.m04193 hypothetical protein  and genscan
          Length = 374

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 82  NLMQPXGNERASFRSLRKNIGGRWKRLVKKKPEQEVYTI 198
           NL++P GN  +    L +N     +R+VK+  E +V  I
Sbjct: 86  NLLEPLGNRVSRLMGLVRNAEEHRERIVKRNQESDVREI 124


>At1g19990.1 68414.m02504 expressed protein ; expression supported
           by MPSS
          Length = 251

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 73  DQDNLMQPXGNERASFRSLRKNIGGRWKRLVKKKPEQEVYTIPPELKPQ 219
           D+D+  +P     +S    ++N     +  VKKK E++VY +P + + Q
Sbjct: 76  DKDDEKKPVSKRNSSVGVSKENKKPEKEEEVKKKRERKVYDLPGQKREQ 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,229,634
Number of Sequences: 28952
Number of extensions: 203096
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)