Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0484
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   101   9e-23
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    27   2.3  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   9.3  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  101 bits (242), Expect = 9e-23
 Identities = 46/85 (54%), Positives = 56/85 (65%)
 Frame = +3

Query: 255 PAGGGDPILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXX 434
           P GGGDP+LYQHLF FFGHPEVYILI+P FG++SHII      K  F             
Sbjct: 229 PEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIA 287

Query: 435 XXXFIV*AHHIFTVGIDIDTRAYFT 509
               +V +HH+FTVG+D+DTRAYF+
Sbjct: 288 LLGLMVWSHHLFTVGLDVDTRAYFS 312



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 32/83 (38%), Positives = 41/83 (49%)
 Frame = +1

Query: 4   HEGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXX 183
           H G ++DLAI SL L GISS                   S  Q+PLF  A+ IT+     
Sbjct: 145 HSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLL 204

Query: 184 XXXXXAGAITILLTDRNLNTSFF 252
                AG + +L +DRNLNTSF+
Sbjct: 205 TLPVLAGGLFMLFSDRNLNTSFY 227



 Score = 37.9 bits (84), Expect = 0.001
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +2

Query: 503 FYSATIIIAVPTGIKIFR*LATIHGTQINYN 595
           F +AT++IA+PTGIKIF  LAT+ G  I ++
Sbjct: 311 FSAATMVIAIPTGIKIFSWLATLTGGAIQWS 341


>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -1

Query: 275 WVSSSSRSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTA 150
           W+  S  S  DV K      +V+A  + GS       +IPTA
Sbjct: 379 WIEVSGASPRDVAKQLKSQQLVMAGHREGSMYKELKRIIPTA 420


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 307 PKNQNKC*YKIGSPPPAGQKMMY 239
           P N ++  + +G PPP GQK+ +
Sbjct: 549 PTNSDEKSHALGFPPPPGQKIEF 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,808
Number of Sequences: 5004
Number of extensions: 31019
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)