Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0484
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0072 - 15721866-15723563                                         31   1.0  
01_04_0070 - 15704794-15706491                                         31   1.0  
03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    28   5.5  

>01_04_0072 - 15721866-15723563
          Length = 565

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 416 CYTSNWVIRIYCLSSSYIHCRYRY*YTSIFYSATII--IAVPTGIKIF 553
           CYTSNW + +  ++   + C +     +I+Y+  +   +A+  G+KIF
Sbjct: 342 CYTSNWWLTVSLVTFLTVFCIFFAITDTIYYNGKVYYGVAMRGGLKIF 389


>01_04_0070 - 15704794-15706491
          Length = 565

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 416 CYTSNWVIRIYCLSSSYIHCRYRY*YTSIFYSATII--IAVPTGIKIF 553
           CYTSNW + +  ++   + C +     +I+Y+  +   +A+  G+KIF
Sbjct: 342 CYTSNWWLTVSLVTFLTVFCIFFAITDTIYYNGKVYYGVAMRGGLKIF 389


>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 251 LTCWRRRPNFISTFILIFWTS*SLYFNFTRI 343
           + CWRR P     F+L F +  +LYF+ + I
Sbjct: 442 MLCWRRPPVLALCFLLFFGSVEALYFSASLI 472


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,015,035
Number of Sequences: 37544
Number of extensions: 174332
Number of successful extensions: 272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)