Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0483
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.7
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 2.2
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 27 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.9
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 2.9
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 3.8
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 26 5.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 26 5.1
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 26 5.1
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 25 6.7
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 6.7
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 8.8
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 151 SSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTF 255
SS+ SS++SS +SRPS+ T STF
Sbjct: 215 SSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTF 249
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 2.2
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +3
Query: 420 PGTQPSTSSIKELFNTSSNLNSTRYHTHKNS----SLRWSENFRRSKSTK-WSHSLTIST 584
P T PST+SI E T STR +H S S + S+ R T + S +I
Sbjct: 134 PTTFPSTTSITENLPTIDPTRSTRSSSHIQSLSPESKQTSDGHRPPSPTSITTTSTSIDP 193
Query: 585 SMAFNT 602
S+AF++
Sbjct: 194 SVAFSS 199
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 39 SPLXTGYLPPFNSFYYPFAQRSNDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAFDK 218
SPL +L F+Y ++EL ++ I ++D+ E+ FF + K DK
Sbjct: 982 SPLLLRFLATTVGFHYLSEINFIEHELDNWYHHRNIDYVDLLEQNFFLSF-VSNLKIIDK 1040
Query: 219 K 221
K
Sbjct: 1041 K 1041
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = +1
Query: 109 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTF 255
T + TP + +STF + TS TS ST TVA STF
Sbjct: 603 TPTSTPLSNSTVAPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTF 651
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 109 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTF 255
+++ TP + +STF + TS TS ST TVA STF
Sbjct: 665 SSASTPSSNSSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTF 713
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 2.9
Identities = 21/73 (28%), Positives = 32/73 (43%)
Frame = +1
Query: 4 HEWVKSLSFPGTRLFXLATSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSN 183
H W+ L T L S LSTP H P ++ S + +++ +SS +R
Sbjct: 102 HRWLSKL----TALSKSTNSTLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQKR--KR 155
Query: 184 TSSKVTSRPSTKK 222
TS + R + KK
Sbjct: 156 TSEGPSERRARKK 168
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 88 HLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVT-SRPS 213
H P++ + + P T K STF+R HSS+T S + S PS
Sbjct: 390 HRPRKNINFTPLPPSTPSK--PSTFVRPHSSSTDSPPSPSTPS 430
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 471 SNLNSTRYHTHKNSSLR--WSENFRRSKSTKWSHSLT 575
+N + ++ +N ++ W EN+ K+ KWS S T
Sbjct: 226 ANRYAKKFGIDRNKMMQRLWGENYFNPKTKKWSKSAT 262
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 471 SNLNSTRYHTHKNSSLR--WSENFRRSKSTKWSHSLT 575
+N + ++ +N ++ W EN+ K+ KWS S T
Sbjct: 226 ANRYAKKFGIDRNKMMQRLWGENYFNPKTKKWSKSAT 262
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -3
Query: 619 SLLKWTVLKAIEVEMVXECDHLVDFERRKFSDQRSEEFLCVWYLVLFKFDDVLNNS 452
SLL L A EV M CD+ V FS+ ++ +C+ ++ FD L +S
Sbjct: 800 SLLNEQGLTAFEVLMTVWCDNFV-----YFSNFKNISIICIAMTKIYSFDSPLLDS 850
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 567 NVTIWSTLNVGNFQTNEVKSSCVY 496
N TIWS G +Q +++ + CV+
Sbjct: 278 NSTIWSKFEDGWYQISKIGAQCVF 301
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 109 TTSCTPRRT--TKKFASSTFMRRHSSNTSSKVTSRPST 216
+TS P +T + F SST + SS+TSS +S+ ST
Sbjct: 259 STSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDST 296
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +3
Query: 426 TQPSTSSIKELFNTSSNLNST--RYHTHKNSSLRWSENFRRSKSTK 557
T P + S K+L T+S +NST + K +W + K TK
Sbjct: 220 TSPISQSPKKLTPTTSPINSTSLSFVDAKKPGSKWPSQYDFPKKTK 265
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 436 EGWVPGRSLVEVKSTRNKCVLVERLRS 356
+GWVPG++L V+ K ++ L S
Sbjct: 127 DGWVPGKTLFPVEEAIKKGSIIMNLLS 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,290
Number of Sequences: 5004
Number of extensions: 48723
Number of successful extensions: 189
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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