Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0483
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1691 - 35393728-35394585 32 0.42
12_02_0674 - 21745321-21746223,21746229-21747608 31 0.56
03_06_0059 + 31334842-31334868,31335064-31335330,31337162-31337344 29 3.9
01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330... 28 5.2
10_08_0926 - 21609148-21609618,21609898-21610106,21611638-21611914 28 6.9
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 28 6.9
10_01_0354 - 3887790-3890204 27 9.1
06_01_0029 - 288676-289287,289441-289733,289842-290031 27 9.1
>04_04_1691 - 35393728-35394585
Length = 285
Score = 31.9 bits (69), Expect = 0.42
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 174 FFQYLQQGHFKAFDKKIDLHSSKAVNFWATTGRRTPIYSKKTSSNSTSV 320
FF Y + + A + + A FW TGR P+ S SS+S +V
Sbjct: 66 FFSYKDRKYPSARGTGTRTNRATAAGFWKATGRDKPVLSSSRSSSSPAV 114
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 31.5 bits (68), Expect = 0.56
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +1
Query: 25 SFPGTRLFXLATSRL-STPFIIHLPK---EAMTTSCT-PRRTTKKFASSTFMRRHSSNTS 189
S P T L +TS++ STP L + +T+CT P T SST S ++
Sbjct: 542 STPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTSSTPSTSPLSTST 601
Query: 190 SKVTSRPSTKKLICTVAKQST 252
SK +S PST L + K T
Sbjct: 602 SKTSSTPSTSPLSSSTIKIPT 622
>03_06_0059 + 31334842-31334868,31335064-31335330,31337162-31337344
Length = 158
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -1
Query: 588 SKSKWSXNVTIWSTLNVGNFQTNEVKSSCVYG--TWYCLNSMMY*TILL*SW 439
S SKW + +S +V EV+ S + G TW+CL S Y + W
Sbjct: 107 SNSKWMLSRRAFSPFHVSAKFAWEVQESLLDGGSTWFCLGSSAYFVAVKYDW 158
>01_06_1129 +
34732007-34732091,34732814-34732934,34733012-34733083,
34733168-34733242,34733348-34733419,34733514-34733675,
34733780-34733854,34733932-34734003,34734089-34734160,
34734245-34734313,34734388-34734462,34734557-34734628,
34734732-34734866,34734946-34735415,34735490-34735648,
34735741-34735880,34735974-34736193,34736305-34736540,
34736627-34737130
Length = 961
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 420 PGTQPSTSSIKELFNTSSNLNSTRYHTHKNSSLRW----SENFRRSKSTKWSHSLTISTS 587
PG+ + S + EL S+ LN T ++L + + NF S + +W +LT T+
Sbjct: 257 PGSIANLSRLMELSLASNQLNGTVPDLTSANALTYVDLSNNNFMSSPAPRWFSTLTSLTT 316
Query: 588 MAFNTVHFS 614
+ ++ H +
Sbjct: 317 LFMDSDHLT 325
>10_08_0926 - 21609148-21609618,21609898-21610106,21611638-21611914
Length = 318
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +3
Query: 30 SWYSPLXTGYLPPFNSFYYPFAQRSNDYELHTEKNYEEIRFLDIYEKT 173
S Y + Y PF F PF Q D + ++ +E ++ + ++ K+
Sbjct: 220 STYPVIVPAYFSPFLQFSVPFWQNQKDEDGPVQETHEIVKPVPVHSKS 267
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 96 QRSNDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAF 212
++S E T+KNYE I F D ++ QYL K F
Sbjct: 607 EKSPFLERLTKKNYEVIYFTDPVDEYLMQYLMDYEDKKF 645
>10_01_0354 - 3887790-3890204
Length = 804
Score = 27.5 bits (58), Expect = 9.1
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = -3
Query: 556 LVDFERRKFSDQRSEEFLCVWYLVLFKFDDVLNNSFIELVEGWVPGRSLVEVKSTRNKCV 377
L+D ER++ + +E+L V++ DD+L+++ E ++ R + + T+ CV
Sbjct: 53 LLDAERKQSTSSALKEWLRKLKDVMYDIDDILDDASTETLK-----RRVSKDVVTQTNCV 107
Query: 376 LVERLRSSTK 347
+ RL+ K
Sbjct: 108 HISRLKLRRK 117
>06_01_0029 - 288676-289287,289441-289733,289842-290031
Length = 364
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 243 AVNFWATTGRRTPIYSKKTSS 305
A FW TGR PIY+ K S
Sbjct: 101 AAGFWKATGRDKPIYATKQHS 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,862,657
Number of Sequences: 37544
Number of extensions: 300777
Number of successful extensions: 825
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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