Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0483
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_27593| Best HMM Match : AdoMet_Synthase (HMM E-Value=0.53) 29 4.0
SB_23488| Best HMM Match : PSI_8 (HMM E-Value=5) 29 4.0
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_242| Best HMM Match : AFP (HMM E-Value=0.45) 29 4.0
SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29) 28 7.0
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06) 28 7.0
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1) 28 7.0
SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +1
Query: 58 TSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLICTV 237
T R S H + + TT RR + AS T R SSNT+ + T RPS K+L T
Sbjct: 1113 TGRSSNTTRSHTRRSSNTTRGHTRRQVTQLASHT---RRSSNTTRRHTRRPS-KQLAVTQ 1168
Query: 238 AKQ 246
Q
Sbjct: 1169 GGQ 1171
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 417 RPGTQPSTSSIKELFNTSSNLNSTRYHTHKNSSLRWSENFRRSKSTKWSHSLTISTSMAF 596
R T+ S+++ + +T + N+TR HT ++S+ S RRS +T H+ S +
Sbjct: 740 RSHTRRSSNTTRR--HTRRSSNTTRRHTRRSSNTTRSHT-RRSSNTTRGHTRRSSNTTRS 796
Query: 597 NTVHFSKE 620
+T SK+
Sbjct: 797 HTRRSSKQ 804
>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 109 TTSCTPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKK 222
TTS +P R KK SS +R SS++SS R + KK
Sbjct: 65 TTSSSPERNIKK-KSSKAPKRQSSSSSSSSPKRKTKKK 101
>SB_27593| Best HMM Match : AdoMet_Synthase (HMM E-Value=0.53)
Length = 794
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 148 ASSTFMRRHSSNTSSKVTSRPSTKKLICTVAKQSTFGQLLA 270
+ T + H+SNTSSK TS PS + L KQ G+LL+
Sbjct: 35 SKKTTQKSHASNTSSKTTS-PSHRTL-----KQKPIGELLS 69
>SB_23488| Best HMM Match : PSI_8 (HMM E-Value=5)
Length = 192
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 263 YWQTNADLFEEDFLQFYQRSYEVNARXVLGA--APKPFNQYTFIPSALDFYQTSA 421
Y T L ++ LQFY + Y + PK + QYTF + + Y +SA
Sbjct: 93 YIPTCVQLRHKNLLQFYVKKYVACLMFATSSDFCPKEYEQYTFADTWIASYLSSA 147
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 338 RXVLGAAPKPFNQ--YTFIPSALDFYQTSARDPAFYQLYKRIVQYIIEFKQYQVPY 499
R VL A KP+ Y F +ALD ++T +D Y + + + EF Q + Y
Sbjct: 182 RYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEY 237
>SB_242| Best HMM Match : AFP (HMM E-Value=0.45)
Length = 147
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Frame = +1
Query: 10 WVKSLSFPGTRLFXLATSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTS 189
+ + S+ T + TS STP P TTS T + S T ++ TS
Sbjct: 68 YTSTTSYTSTTSYTSTTSYRSTPSYTPTPSYTCTTSYTCTTSYTSTTSYTCTTSYTCTTS 127
Query: 190 -SKVTSRPSTKKLICTVA 240
+ +TS T CT +
Sbjct: 128 YTWITSYTCTTSYTCTTS 145
>SB_6162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1808
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 323 KNAGRIGGSLLRIDRRSSASSCPKVDCF 240
K G+IG L R D+R + + C K D F
Sbjct: 548 KTRGKIGKILKRFDKRLATTGCTKEDLF 575
>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1012
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +1
Query: 121 TPRRTTKKFASSTFMRRHSSNTSSKVTSRPSTKKLI 228
TPRR T++F+++T + +SNT+ ++ + + + I
Sbjct: 531 TPRRLTQRFSTATTLLAQTSNTTKELGKKYAKSRSI 566
>SB_4607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 105 NDYELHTEKNYEEIRFLDIYEK 170
+DYEL T NYE +R ++ YE+
Sbjct: 2 HDYELCTTMNYERLRTMNDYER 23
>SB_57651| Best HMM Match : Homeobox (HMM E-Value=3e-29)
Length = 294
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 272 TNADLFEEDFLQFYQRSYEVNARXVLGAAPKPFNQYTFIPSALDFYQTSARDPAFYQ 442
T AD+F +D FYQ+S + ++ +PK SA Y S + P+ YQ
Sbjct: 54 TRADMFYQDPFLFYQQSPHYSPHNIVPPSPKYSPHLMGDCSAQSAYFVS-KQPSHYQ 109
>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
Length = 274
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +3
Query: 423 GTQPSTSSIKELFNTSSNLNS-TRYHTHKNSSLRWSENFRRSKSTKWSHSLTISTSMAF- 596
G SS+ NT+ N T+ +T NSSL W++ S+ W+H T S +
Sbjct: 25 GNTTHNSSLLTQGNTTHNSRLWTQGNTTHNSSL-WTQGNTTHNSSLWTHGNTTHNSSLWT 83
Query: 597 --NTVHFS 614
NT H S
Sbjct: 84 QGNTTHNS 91
>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
Length = 231
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Frame = +1
Query: 10 WVKSLSFPGTRLFXLATSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNTS 189
+ + S+ T + TS STP TTS T + S T ++S TS
Sbjct: 146 YTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTSYTSTTS 205
Query: 190 -SKVTSRPSTKKLICTVAKQST 252
+ TS T T + ST
Sbjct: 206 YTSTTSYTPTPSYTATTSYTST 227
>SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1057
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +3
Query: 105 NDYELHTEKNYEEIRFLDIYEKTFFQYLQQGHFKAFDKKIDLHSSKAVNFWATT 266
N+ H EK ++I LD E+ F G FD + D + + + W+ T
Sbjct: 549 NEMGSHQEK--KQIEILDSQEEGAFNPFVDGAVYVFDARSDKYHGRGTSDWSNT 600
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 12 GKIPEFSWYSPLXTGYLPPFNSFYYPFAQRSNDYELHTEKNYEE 143
G+ +YS GYLPP ++ YP + N Y L T+K+ EE
Sbjct: 1752 GRRRTIEYYSGTPQGYLPPAHTRPYPV--QPNIYRL-TKKSEEE 1792
>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 21 PEFSWYSPLXTGYLPPFNSFYYPFAQRSND 110
P + Y P Y PP+ S Y P Q+ ND
Sbjct: 477 PPYKSYQPPYKSYQPPYKS-YQPLHQQRND 505
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,025,292
Number of Sequences: 59808
Number of extensions: 337045
Number of successful extensions: 1094
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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