Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0483
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g11780.1 68418.m01375 expressed protein 32 0.27
At4g18220.1 68417.m02707 purine permease family protein similar ... 29 2.5
At4g18210.1 68417.m02706 purine permease family protein similar ... 29 3.3
At1g64410.1 68414.m07301 hypothetical protein 29 3.3
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 4.3
At5g49850.1 68418.m06173 jacalin lectin family protein similar t... 28 5.7
At4g16563.1 68417.m02506 aspartyl protease family protein contai... 28 5.7
At5g13520.1 68418.m01561 peptidase M1 family protein similar to ... 27 7.6
At4g37190.1 68417.m05265 expressed protein 27 7.6
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 27 7.6
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 27 7.6
At1g69230.2 68414.m07930 expressed protein 27 7.6
At1g69230.1 68414.m07929 expressed protein 27 7.6
>At5g11780.1 68418.m01375 expressed protein
Length = 494
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +1
Query: 7 EWVKSLSFPGTRLFXLATSRLSTPFIIHLPKEAMTTSCTPRRTTKKFASSTFMRRHSSNT 186
EW+ SL G R+F S+ +IH + ++ T ++ ++F T M + +
Sbjct: 372 EWLVSLEEQGPRVFNCDHSKNYAKSVIHRSRPDLSIGTTLQKQEEEFDQDTDMADEQNVS 431
Query: 187 SSKVTSRPSTKK 222
S + SR + K+
Sbjct: 432 SISILSRNTRKR 443
>At4g18220.1 68417.m02707 purine permease family protein similar to
purine permease [Arabidopsis thaliana] GI:7620007;
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 344
Score = 29.1 bits (62), Expect = 2.5
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Frame = +1
Query: 22 LSFPGTRLFXLATSRLS-TPFIIHLPKEAMTTSCTPRRTTKKFASSTFMR-RHSSNTSSK 195
L P + L + S+L+ T F +L T SST + + + S K
Sbjct: 93 LYLPVSTLSLICASQLAFTAFFSYLLNSQKLTPIILNSLFLLTISSTLLAFNNEESDSKK 152
Query: 196 VTSRPSTKKLICTVAKQSTFGQLLA 270
VT K +CTV + FG LL+
Sbjct: 153 VTKGEYVKGFVCTVGASAGFGLLLS 177
>At4g18210.1 68417.m02706 purine permease family protein similar to
purine permease [Arabidopsis thaliana] GI:7620007,
contains Pfam profile PF03151: Domain of unknown
function, DUF250
Length = 390
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 151 SSTFMRRHSSNT-SSKVTSRPSTKKLICTVAKQSTFGQLLA 270
SST + ++ T S+KVT K ICTVA + +G +L+
Sbjct: 183 SSTLLAFNNEETDSTKVTKGEYVKGFICTVAASAGYGLVLS 223
>At1g64410.1 68414.m07301 hypothetical protein
Length = 1231
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = -3
Query: 619 SLLKWTVLKAIEVEMVXECDHLVDFER---RKFSDQRSEEFLCVWYLVLFK-FDDVLN 458
SL KW + I E V +C+H + ER R + ++ EE+L + L K +D++++
Sbjct: 762 SLSKWKQMPQISDEHVEKCNHFILDERKYDRAYLTEKHEEWLTMVTLEQKKIYDEIMD 819
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 28.3 bits (60), Expect = 4.3
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = +3
Query: 54 GYLPPFNSFYYPFAQRSNDYELHTEKNYEEI-----RFLDIYEKTFFQYLQQGHFKAFDK 218
GY+ P + F + + R+ D H E E R D EK Q + + HF+
Sbjct: 1263 GYITPRDLFRWAYRFRTYDGTSHEELAREGYYILAERLRDDTEKVVVQEVLERHFRVSLA 1322
Query: 219 KIDLHSSKAVNFWATTGRRTPI 284
K DL++ + T G +T I
Sbjct: 1323 KDDLYNMPVLLVGDTGGGKTTI 1344
>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
myrosinase-binding protein homolog [Arabidopsis
thaliana] GI:2997767; contains Pfam profile PF01419
jacalin-like lectin domain
Length = 596
Score = 27.9 bits (59), Expect = 5.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 33 WYSPLXTGYLPPFNSFYYP 89
WY+PL GY+ + +YP
Sbjct: 421 WYAPLGAGYITALGAHFYP 439
>At4g16563.1 68417.m02506 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 499
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Frame = +1
Query: 46 FXLATSRLSTPFIIHLPKEAMTT--SCTPRRTTKKFA--SSTFMRRHSSNTSSKVTSRP 210
F + S LSTP ++HL T+ S +P K + SS RRH + S P
Sbjct: 18 FHFSVSSLSTPLLLHLSHSLSTSKHSSSPLHLLKSSSSRSSARFRRHHHKQQQQQLSLP 76
>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
hydrolase) {Homo sapiens}; contains Pfam profile
PF01433: Peptidase family M1
Length = 616
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 514 EEFLCVWYLVLFKFDDVLNNSFIELVEGWVPG 419
+EFL Y+ FKF + N+F+E ++ +PG
Sbjct: 417 DEFLKK-YIATFKFKSIDTNTFLEFLKANIPG 447
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 27.5 bits (58), Expect = 7.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 198 DLAGGIGRMSSHKCRGSEFLRSSSRCATRSHCFFGQMDNKRS 73
+L G +G MSS RG+ + SS + S +FG +D +RS
Sbjct: 71 NLKGALGTMSS---RGTLYNEGSSSRSDSSATWFGDVDTQRS 109
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 257 GNYWQTNADLFEEDFLQFYQRSYEVNARXVLGAAPKPFNQYTFIPSALDFYQTSARDPA 433
G Q +A L +D FY +E N++ VL FN+ TF +A Q PA
Sbjct: 676 GQGLQISAQLSRKDGQVFYSMLFENNSQSVLDGFMIQFNKNTFGLAAAGSLQIPPLHPA 734
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
identical to ataxia-telangiectasia mutated protein (Atm)
[Arabidopsis thaliana] GI:7529272; contains Pfam profile
PF00855: PWWP domain; contains GA donor splice site at
exon 73
Length = 3255
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +2
Query: 428 PAFYQLYKRIVQYIIEFKQYQVPYTQELFTSLV 526
P+F Y I+++++E K+Y+ + ++SLV
Sbjct: 945 PSFQSEYGTILRHLLEIKEYRFQMRKRTYSSLV 977
>At1g69230.2 68414.m07930 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 148 ASSTFMRRHSSNTSSKVTSRPSTK 219
+++ +MR NT + +T RPSTK
Sbjct: 67 SANNYMRAEGQNTGNFITDRPSTK 90
>At1g69230.1 68414.m07929 expressed protein
Length = 110
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 148 ASSTFMRRHSSNTSSKVTSRPSTK 219
+++ +MR NT + +T RPSTK
Sbjct: 67 SANNYMRAEGQNTGNFITDRPSTK 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,567
Number of Sequences: 28952
Number of extensions: 244100
Number of successful extensions: 874
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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