Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0482
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   2.9  
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   3.8  
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   6.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.8  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   8.8  

>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -2

Query: 245  TLYSYIRRLRYKIGAQRGAXTHDPEIKSLMLYRPS*PGFVMSRH*RMHAFLSKSRPVRDR 66
            T++S+I   R++  ++R +  HD E  SL+ Y P+ P  V+        F+ + R  R R
Sbjct: 1155 TVFSWILNPRFR--SKRRSTDHDVESLSLIPYEPTSPNEVIDSIRHSLGFVQRIRGGRIR 1212


>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 180 VGAGPTLGANFVTQSPY 230
           V  GP+LG NF   SPY
Sbjct: 551 VAKGPSLGTNFTLASPY 567


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 223 DCVTKLAPNVGPAPTTLRLRVSCCTDR 143
           D + K A  V P P  + L + CC D+
Sbjct: 515 DAIRKYAFVVSPYPLFISLEIHCCPDQ 541


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 451 ITSKDNETRNVSENRGKNIDKSGVSRKHSGRYA 353
           ++SKD E R  ++  GK       S KHS + A
Sbjct: 99  VSSKDEELRKHAKGEGKRSKNRKRSSKHSEKQA 131


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 483  LDPLKYGNEFISHLKIMKPGTFQRIVVKILIRAVCHANTPGVTQKPN 343
            +DP     EF+ HLK   P T Q + VK L  +   +    VT+KP+
Sbjct: 975  VDPFSLFQEFMVHLKDNSPVTLQDL-VKNLEASEQQSLQRLVTEKPS 1020


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,665
Number of Sequences: 5004
Number of extensions: 57281
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)