Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0482
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0641 + 19639211-19639366,19640376-19640882                       32   0.42 
05_06_0115 + 25712964-25713015,25713325-25713437,25713511-257136...    32   0.42 
02_04_0333 + 22096960-22097445,22098508-22098643,22099159-220993...    29   2.2  
12_01_0359 + 2736797-2737050,2737801-2738153,2738583-2738821,273...    27   9.0  
08_01_0199 + 1628158-1629192                                           27   9.0  

>08_02_0641 + 19639211-19639366,19640376-19640882
          Length = 220

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = +3

Query: 114 VTTHYKARLTRSVQHETLNLRVVGAGPTLGANFVTQSP 227
           VT    ARL +SV+ + LNL VVG+ PT+  N   Q+P
Sbjct: 25  VTFTILARLAQSVERKALNLVVVGSSPTV--NIPIQTP 60


>05_06_0115 +
           25712964-25713015,25713325-25713437,25713511-25713639,
           25713759-25713861,25713979-25714053,25714147-25714229,
           25714568-25714640,25714732-25714988,25715322-25715537
          Length = 366

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 227 RRLRYKIGAQRGAXTHDPEIKSLMLYRPS 141
           R  +  + A RGA THD ++KSL LYR S
Sbjct: 338 REKKKGMDAHRGARTHDHKVKSLALYRLS 366


>02_04_0333 +
           22096960-22097445,22098508-22098643,22099159-22099325,
           22099447-22099567,22099660-22099760,22099908-22100006,
           22100512-22100622,22100709-22100788,22100880-22100949,
           22101880-22101965,22102097-22102166,22102250-22102338,
           22102448-22102572,22102686-22102766,22102848-22102908,
           22103002-22103060,22103134-22103273,22103391-22103480,
           22103917-22103976,22104072-22104188
          Length = 782

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 412 NRGKNIDKSGVSRKHSGRYA 353
           NR K +DK GV RK  GRYA
Sbjct: 420 NRIKQLDKLGVDRKRLGRYA 439


>12_01_0359 +
           2736797-2737050,2737801-2738153,2738583-2738821,
           2738916-2739035,2739115-2739162
          Length = 337

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 442 KDNETRNVSENRGKN-IDKSGVSRKHSGRYAKTQSMVTN 329
           K  ETR  +  R KN +DK    RK S RYAK  + V +
Sbjct: 253 KKKETRCSTSKRKKNWVDKLHKKRKKSLRYAKNGNEVAH 291


>08_01_0199 + 1628158-1629192
          Length = 344

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -2

Query: 383 CVTQTLRALRKNPINGYQLTDMAPWDKHSLRVHSLHCGYRWV*QVF 246
           C T+T RA  +  I GY L       +         CGYRW  +V+
Sbjct: 17  CATRTARATHQFEIVGYSLKRCLAAGEFVRSSAFAACGYRWSVRVY 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,187
Number of Sequences: 37544
Number of extensions: 387311
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)