Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0482
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44641| Best HMM Match : rve (HMM E-Value=1.9e-19)                   27   9.2  
SB_963| Best HMM Match : CUB (HMM E-Value=1.8e-19)                     27   9.2  
SB_52657| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_44641| Best HMM Match : rve (HMM E-Value=1.9e-19)
          Length = 840

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +2

Query: 230 YRNIR*ILVT--PTGSRSGENVLLMNVYPR 313
           +RN++ +LV   PTG R+  N LLMN++ R
Sbjct: 347 WRNLKEVLVPSDPTGQRNLTNKLLMNLHVR 376


>SB_963| Best HMM Match : CUB (HMM E-Value=1.8e-19)
          Length = 507

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 371 TLRALRKNPINGYQLTDMAPWDKHSLRVHSLHCGYR 264
           +L+    N  NGY+  D A WD   +R H     Y+
Sbjct: 416 SLQPSSDNSDNGYKYNDSARWDSDFIRYHIATAQYQ 451


>SB_52657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 228 KEIALQNWRPTWGXHPRP*D*ESHAVPTELAGLCNESSLAHARLFKQIP-PG 76
           K +  Q++    G + RP D +S A+PTEL       S +  + FK++P PG
Sbjct: 3   KPVIFQSFYKLSGLNQRPSDLQSDALPTELF----RHSYSQQKWFKEMPKPG 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,602,891
Number of Sequences: 59808
Number of extensions: 453560
Number of successful extensions: 746
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)