Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0482
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun...    29   1.9  
At4g16130.1 68417.m02444 GHMP kinase family protein contains GHM...    29   2.5  
At3g42850.1 68416.m04489 galactokinase, putative contains some s...    27   7.5  

>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
           subunit-related contains pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 527

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 457 IYITSKDNETRNVSENRGKNIDKSGVSRKHSGRYAKTQSM 338
           + + SK N+T++V + +   IDKS + +   G ++   SM
Sbjct: 146 LVMQSKINDTKDVMKRKANEIDKSKIEKNKPGGFSSMGSM 185


>At4g16130.1 68417.m02444 GHMP kinase family protein contains GHMP
           kinases putative ATP-binding protein domain,
           Pfam:PF00288
          Length = 1039

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 364 RSVCVTHRSYQYFYHDSLKRSGFHY 438
           RSVCVT+ S+ + Y + +  +G+H+
Sbjct: 190 RSVCVTNFSWDFIYAEYVMAAGYHH 214


>At3g42850.1 68416.m04489 galactokinase, putative contains some
           similarity to galactokinase [Pasteurella multocida]
           SWISS-PROT:P57899
          Length = 964

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 364 RSVCVTHRSYQYFYHDSLKRSGFHY 438
           RSVCVT+ S+ + Y + +  +G H+
Sbjct: 138 RSVCVTNFSWDFIYAEYVMAAGHHH 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,074,637
Number of Sequences: 28952
Number of extensions: 300628
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)